Gene PSPTO_0386 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0386 
Symbolepd 
ID1181995 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp428140 
End bp429183 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content59% 
IMG OID637391754 
ProductD-erythrose 4-phosphate dehydrogenase 
Protein accessionNP_790235 
Protein GI28867616 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01532] D-erythrose-4-phosphate dehydrogenase
[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCCAGC CCCGCCCTTA CAAAGTTGCT CTGAACGGTT ACGGCCGTAT TGGCCGTTGT 
GTTGTACGCG CGTTGTGCGA GCGGGGGACC AAGGCCGGGT TTGAAGTGGT TGCCATCAAC 
GATCTGGCTG ACATGGCCAG TCTCGAATAC CTCACGCGCT TTGACTCCAC ACATGGCCGG 
TTTCCCGGCG AAGTGCGGGT CGAAGGGCAA TACCTGCATA TCAACGACCA CCGTATCAAG 
GTGCTGCGCA GTGCGACGCC GGAGGGCATC GACTGGGCCG GGCTGGAAGT CGATCTGGTG 
CTTGAATGCT CAGGTGTTTA CAACACCCGT GACGACGGCC AGCGTTTTCT CGCGGCCGGC 
GCGCCACGGG TGCTGTTTTC CCAGCCGATG GCCAGTGAGC GCGATGTCGA TGCCACTGTG 
GTGTTCGGCA TCAATCAGCA GAAAATGACC GGCCGGGAAT TACTGGTTTC CGCAGCGTCG 
TGCACCACCA ACTGCAGTGT GCCGCTGCTG CGTTTGCTGG ATCAGGCCAT CGGGCTTGAA 
TACATCACCA TCACCACAAT CCACTCGGCG ATGAACGATC AACCGGTGAT CGATGCTTAT 
CACCACGAAG ATCTGCGCCG CACACGCTCG GCGTTCCAGT CAATCATTCC GGTGTCCACC 
GGTCTGGCGA GGGGAATCGA GCGGCTGCTT CCGGAACTTG CCGGCCGAAT TCAGGCCAAA 
GCTGTTCGTG TGCCGACCGT CAATGTGTCG TGCCTGGACA TCACATTGCA AACGGCGCGG 
GACACCGATG CCGTGGAAAT CAACCGTATC CTGCGCGAGG CTGCCACCAG CGGCCCGCTC 
AAGGGGCTGC TGGCCTACAC TGAGTTGCCG CACGCCAGTT GCGATTTCAA TCATGACCCG 
CATTCGTCGA TTGTCGATGC GAGTCAGACC CGCGTTTCTG GTCCAAGGCT GGTGAATCTG 
CTGGCCTGGT TCGATAACGA GTGGGGCTTT GCCAATCGAA TGCTCGACGT CGCTGATCAC 
TTTTTGCGCG TCGCTGACCA ATAA
 
Protein sequence
MPQPRPYKVA LNGYGRIGRC VVRALCERGT KAGFEVVAIN DLADMASLEY LTRFDSTHGR 
FPGEVRVEGQ YLHINDHRIK VLRSATPEGI DWAGLEVDLV LECSGVYNTR DDGQRFLAAG 
APRVLFSQPM ASERDVDATV VFGINQQKMT GRELLVSAAS CTTNCSVPLL RLLDQAIGLE 
YITITTIHSA MNDQPVIDAY HHEDLRRTRS AFQSIIPVST GLARGIERLL PELAGRIQAK 
AVRVPTVNVS CLDITLQTAR DTDAVEINRI LREAATSGPL KGLLAYTELP HASCDFNHDP 
HSSIVDASQT RVSGPRLVNL LAWFDNEWGF ANRMLDVADH FLRVADQ