Gene PSPTO_0373 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0373 
Symbol 
ID1181982 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp408969 
End bp411536 
Gene Length2568 bp 
Protein Length855 aa 
Translation table11 
GC content61% 
IMG OID637391741 
ProductRhs family protein 
Protein accessionNP_790222 
Protein GI28867603 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3209] Rhs family protein 
TIGRFAM ID[TIGR01643] YD repeat (two copies) 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCGAGG CGGCGCGGTT GATGGATGAG ATTGATCACA CCAGTGCCAT GACAGGCTTT 
GTGCTCGGTG CGATTGTGGG CATTGCGGCA GTGGCGTATG TGTCGTTCAC CGTCGCCACC
TGCGGGCTCG GCGGAATTTT ACTGGGTCTT GCGGTCGGTC TGGCCGGTAA TGCCATTGCC
AGCCTCGGAG AGAGTATCGG CGCCGCCTTC AGCTCTGCGG CGGGGCAGAT CGAGTCGGGC
TCGCCCAACG TGTTCATCAA CGGTCGCCCC GCCGCGTTTG CCATCGACAG CACGGCGGTG
TGCGAAAAGC ACTCGCCCAT CGTCAAGGTG GCCGAAGGCT CCAGCAATGT ATTCATCAAC
GGCAAGCCTG CCGCGCGCAA AGGCGACAAA CTGACCTGCG GCGCAAAAAT CGGCACCGGC
TCCAACAACG TGTTCATTGG CGGCGGCACC CATCGCTACC TGGCGGTGGA CGATGAAGTG
TCGGCGACAG CCCGCTACAC CGTGGACATT CTGCTGGTGG TCGCGGGCGG TGCCAAAGCG
GTGGGCAGCA TCGCCAAGCT GGGCCTGCAG GCCGGGCTCA AAGCCGCTGG CCCTTGTGCG
CTACGTTTTA TGGGCGGCAT CGTGTTGAGC GATGCCATCG TTCGCTTTGG CGTCGCCCCG
CTGGCGGAAA AAGTGCTCGG CGGCCTGCAC GGCAACCCGG TGGACACCAC CACCGGGCGC
AAACTGCTGA TCGACGAGTT CGACTTCAGC CTGCCCGGCC GGATGCCTAT CGAGTGGACA
CGCTTCTACG CCAGCGACCT CAATGTCGAC AGCGTGCTGG GCAAAGGCTG GGTATTGCCG
TGGGAACAAA GCCTGCGCCG CAAGGGCAGT TTTTTGTACC TCAGCGACAA TCAGGGCCGC
AGCGTGCCGT TCGTGACACT GGACTACAAC CAGCGCATCT ACAACGCACA GGAACAGCTG
TACCTGGTGC GCACCAACGG CGGTCATTAC CTGGTGCAAA CGCTGGACAA CGTTTTCTAC
TACTTCGGCG AAGTACCCGA CGACAACCAG CCGGTGCCGC TGGAACGCAT CGAAAACGCC
CTCGGGCATT TTCTGCATTT TGTGCGCAGT GAAGACGGCG TACTGACCGA CATCTGCGCC
ACCGGCGGGC AGCGCGTGCA CCTGCACTAC GACGAAGTGT CCCACCGCCT GAGCACCGTC
AAACGCATCG TTGACGGCAA GGCGGTCGAA ACGCTGGTGC GTTACCACTA CGACAGCAAC
GGCCAGTTGA ACGGCGTGTA CAACCGCAAT GGCGATTCGG TGCGCACCTT CAGCTACACC
GACGGCCTGA TGACCCGCCA TGCCAATGCA CTGGGGCTTG GCTGCGAGTA CCGCTGGGAA
GTGCTGGATG ACAAACCGCG TGTGGTCGAA CACTGGACCA GCGACGGCGA GCACCTTCAC
TTCGATTATG ATTTTGAAGC GCGCCAGACC CGCGTAACCG ATGTACTGGG CCGCTGCGCC
GAAGTGACCT ACAACAAGGA CCGCCGCGTC ATCGCCAGCA CCGATTTCGG TGGCGAGCAG
TACCGCATCG CGCTGGACGA CACCGGCAAC ATCACCGGCC TGACACTGCC CGACGGCAAT
CAGCTGGGCT TTGAGTACGA CGACCTGTCA CGCCTGACAG CCGAAACCGA CCCGCTGGGC
CGAACCACCC GCTTCAAACA TCACTACAAG ACCACGCTGG TCAAACAGGT CACCTACCCC
GACGGCAGCA CCTGGCAGGC CCGTTACGAT GATCGGGGCA ACCTCATCAC TGAAATCGAC
GCGCTGGGCA ACAAGACCGA GTACTACAAC GGCGAAGACG GCCTGCCGCA CACCATCACC
GACGCGACCC TCAAGTCAAA ATACCTGTGG TGGAACAGCC TGGCGCAGGT CGAACGCTTT
CAGGACTGCT CGGGCAAGAG CACCCATTAC CGGTACGACG AACGCCATCA ACTGATCGCC
GTCACCGATG CCCTGAACAA CACCACCACG CTGGAACGCA AACCCGGCGG CGAAGTGCTG
CGCATCGACC ACCCGGACGG CAGCCGTGAA CGCTTTACCT ACAACGCCCA CGGCCAGGTG
CTGACACACA CCAACGGCAA GGACCAGACC ACCCACCTGG CCCGCAACGC CCGTGGCCTG
CCGGTCCGCC GTCAGGACCC CAAGGGCTTG ATGGTCGCGT ACCAATACGA CAAGGCCCTG
CGCCTGGTGG CACTGACCAA TGAAAACGAT GCGACCTACA CTTTCGCCTA CGACCATTCC
GACCGGCTGA TCGAAGAAAA ACGCATCGAC CAACTGACTC GCCGGTTCAG CTACAACCTG
GGCGGGCATC TGACTCAGGT TGAAGAAACC GGCTACAGCG AAAAAGGCGA ACGGCCACAG
CGCAGCACGT ATTTCGAGCG TGATTCGATT GGCCGCTTAC TGGCCAGACT CAACGACGAT
GCCCGTCAGG ATTTCGCGTA CGACGACAGC GACCGCCTGC TGTCGATTCA GCGCAAGCCC
ACCGACAGCG GCAGAAAACT CGGCGTGACG GCTGAAAAGC TGGAATAA
 
Protein sequence
MFEAARLMDE IDHTSAMTGF VLGAIVGIAA VAYVSFTVAT CGLGGILLGL AVGLAGNAIA 
SLGESIGAAF SSAAGQIESG SPNVFINGRP AAFAIDSTAV CEKHSPIVKV AEGSSNVFIN
GKPAARKGDK LTCGAKIGTG SNNVFIGGGT HRYLAVDDEV SATARYTVDI LLVVAGGAKA
VGSIAKLGLQ AGLKAAGPCA LRFMGGIVLS DAIVRFGVAP LAEKVLGGLH GNPVDTTTGR
KLLIDEFDFS LPGRMPIEWT RFYASDLNVD SVLGKGWVLP WEQSLRRKGS FLYLSDNQGR
SVPFVTLDYN QRIYNAQEQL YLVRTNGGHY LVQTLDNVFY YFGEVPDDNQ PVPLERIENA
LGHFLHFVRS EDGVLTDICA TGGQRVHLHY DEVSHRLSTV KRIVDGKAVE TLVRYHYDSN
GQLNGVYNRN GDSVRTFSYT DGLMTRHANA LGLGCEYRWE VLDDKPRVVE HWTSDGEHLH
FDYDFEARQT RVTDVLGRCA EVTYNKDRRV IASTDFGGEQ YRIALDDTGN ITGLTLPDGN
QLGFEYDDLS RLTAETDPLG RTTRFKHHYK TTLVKQVTYP DGSTWQARYD DRGNLITEID
ALGNKTEYYN GEDGLPHTIT DATLKSKYLW WNSLAQVERF QDCSGKSTHY RYDERHQLIA
VTDALNNTTT LERKPGGEVL RIDHPDGSRE RFTYNAHGQV LTHTNGKDQT THLARNARGL
PVRRQDPKGL MVAYQYDKAL RLVALTNEND ATYTFAYDHS DRLIEEKRID QLTRRFSYNL
GGHLTQVEET GYSEKGERPQ RSTYFERDSI GRLLARLNDD ARQDFAYDDS DRLLSIQRKP
TDSGRKLGVT AEKLE