Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0373 |
Symbol | |
ID | 1181982 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 408969 |
End bp | 411536 |
Gene Length | 2568 bp |
Protein Length | 855 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637391741 |
Product | Rhs family protein |
Protein accession | NP_790222 |
Protein GI | 28867603 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCGAGG CGGCGCGGTT GATGGATGAG ATTGATCACA CCAGTGCCAT GACAGGCTTT GTGCTCGGTG CGATTGTGGG CATTGCGGCA GTGGCGTATG TGTCGTTCAC CGTCGCCACC TGCGGGCTCG GCGGAATTTT ACTGGGTCTT GCGGTCGGTC TGGCCGGTAA TGCCATTGCC AGCCTCGGAG AGAGTATCGG CGCCGCCTTC AGCTCTGCGG CGGGGCAGAT CGAGTCGGGC TCGCCCAACG TGTTCATCAA CGGTCGCCCC GCCGCGTTTG CCATCGACAG CACGGCGGTG TGCGAAAAGC ACTCGCCCAT CGTCAAGGTG GCCGAAGGCT CCAGCAATGT ATTCATCAAC GGCAAGCCTG CCGCGCGCAA AGGCGACAAA CTGACCTGCG GCGCAAAAAT CGGCACCGGC TCCAACAACG TGTTCATTGG CGGCGGCACC CATCGCTACC TGGCGGTGGA CGATGAAGTG TCGGCGACAG CCCGCTACAC CGTGGACATT CTGCTGGTGG TCGCGGGCGG TGCCAAAGCG GTGGGCAGCA TCGCCAAGCT GGGCCTGCAG GCCGGGCTCA AAGCCGCTGG CCCTTGTGCG CTACGTTTTA TGGGCGGCAT CGTGTTGAGC GATGCCATCG TTCGCTTTGG CGTCGCCCCG CTGGCGGAAA AAGTGCTCGG CGGCCTGCAC GGCAACCCGG TGGACACCAC CACCGGGCGC AAACTGCTGA TCGACGAGTT CGACTTCAGC CTGCCCGGCC GGATGCCTAT CGAGTGGACA CGCTTCTACG CCAGCGACCT CAATGTCGAC AGCGTGCTGG GCAAAGGCTG GGTATTGCCG TGGGAACAAA GCCTGCGCCG CAAGGGCAGT TTTTTGTACC TCAGCGACAA TCAGGGCCGC AGCGTGCCGT TCGTGACACT GGACTACAAC CAGCGCATCT ACAACGCACA GGAACAGCTG TACCTGGTGC GCACCAACGG CGGTCATTAC CTGGTGCAAA CGCTGGACAA CGTTTTCTAC TACTTCGGCG AAGTACCCGA CGACAACCAG CCGGTGCCGC TGGAACGCAT CGAAAACGCC CTCGGGCATT TTCTGCATTT TGTGCGCAGT GAAGACGGCG TACTGACCGA CATCTGCGCC ACCGGCGGGC AGCGCGTGCA CCTGCACTAC GACGAAGTGT CCCACCGCCT GAGCACCGTC AAACGCATCG TTGACGGCAA GGCGGTCGAA ACGCTGGTGC GTTACCACTA CGACAGCAAC GGCCAGTTGA ACGGCGTGTA CAACCGCAAT GGCGATTCGG TGCGCACCTT CAGCTACACC GACGGCCTGA TGACCCGCCA TGCCAATGCA CTGGGGCTTG GCTGCGAGTA CCGCTGGGAA GTGCTGGATG ACAAACCGCG TGTGGTCGAA CACTGGACCA GCGACGGCGA GCACCTTCAC TTCGATTATG ATTTTGAAGC GCGCCAGACC CGCGTAACCG ATGTACTGGG CCGCTGCGCC GAAGTGACCT ACAACAAGGA CCGCCGCGTC ATCGCCAGCA CCGATTTCGG TGGCGAGCAG TACCGCATCG CGCTGGACGA CACCGGCAAC ATCACCGGCC TGACACTGCC CGACGGCAAT CAGCTGGGCT TTGAGTACGA CGACCTGTCA CGCCTGACAG CCGAAACCGA CCCGCTGGGC CGAACCACCC GCTTCAAACA TCACTACAAG ACCACGCTGG TCAAACAGGT CACCTACCCC GACGGCAGCA CCTGGCAGGC CCGTTACGAT GATCGGGGCA ACCTCATCAC TGAAATCGAC GCGCTGGGCA ACAAGACCGA GTACTACAAC GGCGAAGACG GCCTGCCGCA CACCATCACC GACGCGACCC TCAAGTCAAA ATACCTGTGG TGGAACAGCC TGGCGCAGGT CGAACGCTTT CAGGACTGCT CGGGCAAGAG CACCCATTAC CGGTACGACG AACGCCATCA ACTGATCGCC GTCACCGATG CCCTGAACAA CACCACCACG CTGGAACGCA AACCCGGCGG CGAAGTGCTG CGCATCGACC ACCCGGACGG CAGCCGTGAA CGCTTTACCT ACAACGCCCA CGGCCAGGTG CTGACACACA CCAACGGCAA GGACCAGACC ACCCACCTGG CCCGCAACGC CCGTGGCCTG CCGGTCCGCC GTCAGGACCC CAAGGGCTTG ATGGTCGCGT ACCAATACGA CAAGGCCCTG CGCCTGGTGG CACTGACCAA TGAAAACGAT GCGACCTACA CTTTCGCCTA CGACCATTCC GACCGGCTGA TCGAAGAAAA ACGCATCGAC CAACTGACTC GCCGGTTCAG CTACAACCTG GGCGGGCATC TGACTCAGGT TGAAGAAACC GGCTACAGCG AAAAAGGCGA ACGGCCACAG CGCAGCACGT ATTTCGAGCG TGATTCGATT GGCCGCTTAC TGGCCAGACT CAACGACGAT GCCCGTCAGG ATTTCGCGTA CGACGACAGC GACCGCCTGC TGTCGATTCA GCGCAAGCCC ACCGACAGCG GCAGAAAACT CGGCGTGACG GCTGAAAAGC TGGAATAA
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Protein sequence | MFEAARLMDE IDHTSAMTGF VLGAIVGIAA VAYVSFTVAT CGLGGILLGL AVGLAGNAIA SLGESIGAAF SSAAGQIESG SPNVFINGRP AAFAIDSTAV CEKHSPIVKV AEGSSNVFIN GKPAARKGDK LTCGAKIGTG SNNVFIGGGT HRYLAVDDEV SATARYTVDI LLVVAGGAKA VGSIAKLGLQ AGLKAAGPCA LRFMGGIVLS DAIVRFGVAP LAEKVLGGLH GNPVDTTTGR KLLIDEFDFS LPGRMPIEWT RFYASDLNVD SVLGKGWVLP WEQSLRRKGS FLYLSDNQGR SVPFVTLDYN QRIYNAQEQL YLVRTNGGHY LVQTLDNVFY YFGEVPDDNQ PVPLERIENA LGHFLHFVRS EDGVLTDICA TGGQRVHLHY DEVSHRLSTV KRIVDGKAVE TLVRYHYDSN GQLNGVYNRN GDSVRTFSYT DGLMTRHANA LGLGCEYRWE VLDDKPRVVE HWTSDGEHLH FDYDFEARQT RVTDVLGRCA EVTYNKDRRV IASTDFGGEQ YRIALDDTGN ITGLTLPDGN QLGFEYDDLS RLTAETDPLG RTTRFKHHYK TTLVKQVTYP DGSTWQARYD DRGNLITEID ALGNKTEYYN GEDGLPHTIT DATLKSKYLW WNSLAQVERF QDCSGKSTHY RYDERHQLIA VTDALNNTTT LERKPGGEVL RIDHPDGSRE RFTYNAHGQV LTHTNGKDQT THLARNARGL PVRRQDPKGL MVAYQYDKAL RLVALTNEND ATYTFAYDHS DRLIEEKRID QLTRRFSYNL GGHLTQVEET GYSEKGERPQ RSTYFERDSI GRLLARLNDD ARQDFAYDDS DRLLSIQRKP TDSGRKLGVT AEKLE
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