Gene PSPTO_0361 details

Gene Information

• Locus tag: PSPTO_0361
• Symbol: typA
• ID: 1181970
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 394429
• End bp: 396249
• Gene Length: 1821 bp
• Protein Length: 606 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637391729
• Product: GTP-binding protein TypA
• Protein accession: NP_790210
• Protein GI: 28867591
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATCGAAA ATCTACGCAA CATCGCCATC ATTGCTCACG TTGACCATGG TAAGACCACC 
CTGGTAGACA AACTCCTGCG TCAATCCGGC ACTCTGGAGC GCGGCGAGCT CAACGATGAG 
CGCGTGATGG ACTCCAACGA CCAGGAAAAA GAGCGCGGTA TTACCATTCT CGCGAAGAAC 
ACCGCGATCA ACTGGAATGG CTACCACATC AACATCGTGG ACACCCCGGG CCACGCCGAC 
TTCGGTGGTG AAGTAGAGCG CGTGATGTCG ATGGTTGACT CCGTACTGCT GCTGGTCGAT 
GCCCAGGACG GCCCTATGCC GCAAACCCGC TTTGTGACCA AGAAGGCTTT CGAAGCCGGC 
CTGCGTCCAA TCGTGGTCAT CAACAAGGTT GACCGTCCAG GCGCGCGTCC GGACTGGGTT 
CTGGATCAGA TCTTCGACCT GTTCGACAAC CTGGGTGCTA CCGAAGAACA GCTGGACTTC 
AAAGTCGTCT ACGCCTCTGC CCTGAACGGC ATTGCCGGTC TGGACCACAC CGAAATGGCT 
GAAGACATGA CCCCGCTGTA TCAGTCCATC GTCGACAACG TTCCGGCACC TGCCGTTGAC 
CGTGACGGCC CGTTCCAGAT GCAAATCTCG GCACTGGACT ACAACAGCTT CCTGGGCATC 
ATCGGCGTTG GCCGTATTGC TCGCGGCAAG GTCAAGCCAA ACACCCAGGT TGTGGCTATC 
GACGCCAACG GCAAGCGCCG TAACGGTCGT ATCCTGAAAC TGATGGGTCA CCACGGTCTG 
CACCGTGTAG ACGTCGAAGA AGCAGCTGCC GGCGACATCG TCTGCATCAG CGGCTTCGAA 
GAGCTGTTCA TCTCCGACAC CCTGTGCGAC CCACAGAACG TTGAAGCGAT GAAGCCGCTG 
ACCGTTGACG AACCTACCGT TTCCATGACG TTCCAGGTAA ACGACTCGCC TTTCTGCGGT 
AAAGAAGGCA AGTTCGTCAC CAGCCGTAAC ATCAAGGAAC GTCTGGACAA AGAACTGCTG 
TACAACGTTG CCCTGCGCGT TGAAGAAGGC GACACCGCCG ACAAGTTCAA GGTCTCCGGC 
CGTGGTGAGC TGCACCTCTC GGTACTGATC GAAACCATGC GTCGCGAAGG CTTCGAAATG 
GGTGTTGGTC GTCCTGAAGT GATCATCCGC ATGGTTGATG GCGTCAAGCA CGAACCGTTC 
GAGAACGTCA CCATCGACCT GCCGGAAGAA TCCCAGGGTT CCATCATGGA ACAGATCGGT 
ATCCGTAAGG GCGACCTGAC CAACATGGTT CCGGATGGCA AGGGCCGTGT TCGTCTTGAA 
TACAACATCC CTGCTCGTGG CCTGATCGGT TTCCGTAACG AATTCCTGAC CCTGACTTCC 
GGCGCAGGCA TTCTGACCAG CATCTTCGAC CGTTACGACG TGATGAAGTC TGGCGACATG 
TCCGGCCGTC AGAACGGCGT TCTGGTTTCG GTTGCTACCG GCAAGGCACT GACCTACTCC 
CTGGAAACAC TGCAAGCCCG TGGCAAGCTG TTCCTGGGTC ATGGCGAAGA TGTGTACGAA 
GGTCAGATCG TCGGCATCAA CAGCCGCGAC AACGACCTGG GTGTAAACCC AACCAAGGGC 
AAGAAGCTCG ACAACATGCG TGCTTCCGGT AAAGACGAAA CCATCGCTCT GGTTCCGCCT 
ATCCGCTTCA CTCTGGAACA AGCGCTGGAA TTCGTACAAG AAGACGAACT CTGCGAAGTG 
ACTCCAAAGT CGATCCGCCT GCGTAAGAAA ATCCTTGGCG AAAGCGAGCG TACCCGCGCT 
GCCAAGAAGT CGGGCAACTG A 

 

Protein sequence

MIENLRNIAI IAHVDHGKTT LVDKLLRQSG TLERGELNDE RVMDSNDQEK ERGITILAKN 
TAINWNGYHI NIVDTPGHAD FGGEVERVMS MVDSVLLLVD AQDGPMPQTR FVTKKAFEAG 
LRPIVVINKV DRPGARPDWV LDQIFDLFDN LGATEEQLDF KVVYASALNG IAGLDHTEMA 
EDMTPLYQSI VDNVPAPAVD RDGPFQMQIS ALDYNSFLGI IGVGRIARGK VKPNTQVVAI 
DANGKRRNGR ILKLMGHHGL HRVDVEEAAA GDIVCISGFE ELFISDTLCD PQNVEAMKPL 
TVDEPTVSMT FQVNDSPFCG KEGKFVTSRN IKERLDKELL YNVALRVEEG DTADKFKVSG 
RGELHLSVLI ETMRREGFEM GVGRPEVIIR MVDGVKHEPF ENVTIDLPEE SQGSIMEQIG 
IRKGDLTNMV PDGKGRVRLE YNIPARGLIG FRNEFLTLTS GAGILTSIFD RYDVMKSGDM 
SGRQNGVLVS VATGKALTYS LETLQARGKL FLGHGEDVYE GQIVGINSRD NDLGVNPTKG 
KKLDNMRASG KDETIALVPP IRFTLEQALE FVQEDELCEV TPKSIRLRKK ILGESERTRA 
AKKSGN