| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0353 |
|---|
| Symbol | ntrB |
|---|
| ID | 1181962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 386144 |
|---|
| End bp | 387229 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637391721 |
|---|
| Product | nitrogen regulation protein NtrB |
|---|
| Protein accession | NP_790202 |
|---|
| Protein GI | 28867583 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTATCA GCGACGCGCT GCACAGACTG TTACTGGATA ACCTGACCAC TGCCACCATT
CTGCTCAACG CCGACCTGCG ACTTGAGTAC ATGAACCCGG CAGCGGAAAT GCTCCTGGCC
ATCAGCGGGC AGCGTAGCCA TGGGCAATTC ATCAGCGAGC TGTTCACCGA GTCGGCTGAG
GCACTGAGTT CGCTGCGTCA GGCAGTGGAA CAGGCACACC CGTTCACCAA GCGCGAAGCG
ATGCTCACCG CACTGACCGG TCAGACATTG ACTGTCGACT ATGCCGTGAC GCCCATCCTC
AGCAAGGGCG ATACCCTGCT GCTGCTTGAA GTGCATCCCC GTGACCGGCT GTTGCGCATC
ACCAAGGAAG AAGCCCAGCT GTCCAAACAG GAAACCACCA AGATGCTGGT GCGCGGCCTG
GCTCACGAAA TAAAGAATCC GCTCGGCGGC ATTCGCGGCG CTGCGCAATT GCTGGCCCGC
GAACTGCCCG AAGAAAGCCT CAAGGATTAC ACCAACGTCA TCATCGAAGA GGCCGACCGC
CTGCGTAATC TGGTTGACCG CATGCTGGGC TCCAACAAGC TGCCGTCGCT GGCGATGACC
AACGTGCACG AAGTGCTTGA ACGGGTGTGC AGCCTGGTGG AGGCCGAGAG CCGGGGCTGC
ATCACGTTGG TGCGTGACTA TGACCCCAGC ATTCCCGACG TTTTGATCGA CCGCGAGCAG
ATGATCCAGG CGGTGCTCAA TATCGTGCGT AACGCCATGC AGGCCATCAG CGGCCAGAAC
GAACTGCGTC TGGGCCGGAT CACCATGAGA ACCCGCGCCA TGCGCCAGTT CACCATCGGG
CATGTGCGCC ACCGACTGGT GAGCAAGATC GAAATTATCG ACAACGGCCC GGGCATCCCG
GCCGAGCTTC AGGAAACCAT TTTCTATCCG ATGGTCAGTG GTCGCCCGGA CGGCACAGGG
CTCGGTCTCG CCATTACCCA GAACATCATC AGCCAGCACC AGGGCCTGAT CGAGTGTGAC
AGCCATCCCG GCCACACCAC GTTCTCGATC TTCCTGCCGC TGGAACAAGG AGCAGCTTCG
ACATGA
|
|---|
| Protein sequence | MTISDALHRL LLDNLTTATI LLNADLRLEY MNPAAEMLLA ISGQRSHGQF ISELFTESAE
ALSSLRQAVE QAHPFTKREA MLTALTGQTL TVDYAVTPIL SKGDTLLLLE VHPRDRLLRI
TKEEAQLSKQ ETTKMLVRGL AHEIKNPLGG IRGAAQLLAR ELPEESLKDY TNVIIEEADR
LRNLVDRMLG SNKLPSLAMT NVHEVLERVC SLVEAESRGC ITLVRDYDPS IPDVLIDREQ
MIQAVLNIVR NAMQAISGQN ELRLGRITMR TRAMRQFTIG HVRHRLVSKI EIIDNGPGIP
AELQETIFYP MVSGRPDGTG LGLAITQNII SQHQGLIECD SHPGHTTFSI FLPLEQGAAS
T
|
|---|
| |