| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0319 |
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| Symbol | |
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| ID | 1181928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 345891 |
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| End bp | 347675 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637391688 |
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| Product | type IV pilus biogenesis protein |
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| Protein accession | NP_790169 |
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| Protein GI | 28867550 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCCC TGGCCCCCTC TTCACAGGAT CGCTGGCTCG ACCTGAACGA CGTGTTGCGT
GAACTGGTCA CCGAAGGCTA TCTGAGCCAG GACGACACGG AAACGGCACT CAGCCAGCGT
CGCAGTGCGG TGAATATCCA GCTGCATCCG CTCGAGTTTC TCGCGTCGCA GCAGTTTGAT
GACTTGAAGC GACCGGGCAA AAAACTCGAC CTGGAAACCC TGACGGCCTG GCTGGCGAAA
GCCTCCGGTC AGCCCTACAT GCGCATCGAC CCGCTGAAGA TCAATGTAGC GGCCGTCACG
CCCCTGATGT CCTACGCCTT CGCCCAGCGC CACAAGATTC TCGCCGTGGC GGTGGACCGC
GAGTCGGTGA CCATCGCCAG CGCCCAGCCA TACGTGCGCT CATGGGAAGC GGACCTGGCG
CACGTGCTCA AGCTGCAGAT CAAACGTGTG GTCGCCAACC CGACTGACAT CCAGCGCATG
GCGATGGAGT TTTTCAGGCT GGCGAAGTCG GTCAGCGGCG CCAATGCGTC TGAGCAGAAA
ATGAGCAACA TGGGCAACTT CGAGCAGTTG CTCAAGCTCG GTGCCAGTGA CCAGGAGCCA
GACGCCAACG ACGCGCACAT CGTCAACATC GTCGACTGGC TGTTCCAGTA CGCATTCCAG
CAACGCGCCA GCGACATCCA TATCGAGCCG CGCCGCGAAC AAGGCACGGT GCGCTTTCGC
ATCGACGGGG TGCTGCACAA CGTCTATCAG TTTCCAGCGC AGGTCATCAT GGCGATTGTC
AGCCGCCTGA AAAGCCTGGG GCGGATGAAC GTCGCTGAAA AACGCAAACC GCAGGACGGA
CGGGTCAAGA CCACCACGCC TGAAAATCGC GAGGTGGAGT TGCGTCTGTC GACCCTGCCG
ACCGCGTTCG GCGAAAAAAT GGTCATGCGC ATCTTCGACC CCGAGGTGTT GCTCAAGGAC
TTCGACCAAC TGGGCTTCTC CAGTGACGAT CTGCGGCGCT GGCAGGAAAT GACCCGCCAG
CCCAACGGCA TCATTCTGGT CACCGGCCCA ACCGGTTCGG GCAAGACCAC CACGCTGTAC
ACCACCCTCA AGAAGCTGGC GACCTCGGAG GTCAACCTCT GCACCATCGA AGACCCCATC
GAGATGGTCG AGCCCGCCTT CAATCAAATG CAGGTGCAGC ACAATATCGA TCTGAGCTTT
GCCGCTGGCG TGCGCGCCTT GATGCGCCAG GACCCGGATA TCATCATGAT CGGCGAAATT
CGCGACCTGG AGACGGCTGA AATGGCCATT CAGGCAGCAT TGACCGGTCA CCTGGTGCTA
TCGACGCTGC ACACCAACGA CGCACCCAGC GCCATCAGCC GCATGCTTGA ACTGGGCGTG
CCACATTACC TGCTCAAAGC CACCATCCTC GGCGTCATGG CCCAGCGTCT GGTGCGCACG
CTGTGCCCGC ACTGCAAGGC GCCGATCAAC CTGAACGAGA CAGACTGGCA AACCCTCACC
CGCCCCTGGC AAGCGCCTGT ACCGCCCGGC GCGCATCAGG CGGTCGGCTG TGTGGAGTGT
CGCGATACCG GTTATCGGGG CCGGGCAGGT GTGTACGAGA TCATGGTCAT GTCCGACAAC
ATCAAGGCAT TGATCTCGGC GGACCTGGAC CTGACCGCCA TGCGTCGTCA GGCGTTCAAG
GAAGGGACGC GCAGCTTGCG TCTGTCTGGT GCGCAAAAAG TCTCGGCCGG GCTGACTACA
CTTGAGGAAG TACTGCGGGT GACACCGCAG AGCGAACAGC GCTGA
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| Protein sequence | MAALAPSSQD RWLDLNDVLR ELVTEGYLSQ DDTETALSQR RSAVNIQLHP LEFLASQQFD
DLKRPGKKLD LETLTAWLAK ASGQPYMRID PLKINVAAVT PLMSYAFAQR HKILAVAVDR
ESVTIASAQP YVRSWEADLA HVLKLQIKRV VANPTDIQRM AMEFFRLAKS VSGANASEQK
MSNMGNFEQL LKLGASDQEP DANDAHIVNI VDWLFQYAFQ QRASDIHIEP RREQGTVRFR
IDGVLHNVYQ FPAQVIMAIV SRLKSLGRMN VAEKRKPQDG RVKTTTPENR EVELRLSTLP
TAFGEKMVMR IFDPEVLLKD FDQLGFSSDD LRRWQEMTRQ PNGIILVTGP TGSGKTTTLY
TTLKKLATSE VNLCTIEDPI EMVEPAFNQM QVQHNIDLSF AAGVRALMRQ DPDIIMIGEI
RDLETAEMAI QAALTGHLVL STLHTNDAPS AISRMLELGV PHYLLKATIL GVMAQRLVRT
LCPHCKAPIN LNETDWQTLT RPWQAPVPPG AHQAVGCVEC RDTGYRGRAG VYEIMVMSDN
IKALISADLD LTAMRRQAFK EGTRSLRLSG AQKVSAGLTT LEEVLRVTPQ SEQR
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