| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0304 |
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| Symbol | |
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| ID | 1181913 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 330437 |
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| End bp | 331435 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637391673 |
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| Product | sensory box/GGDEF domain protein |
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| Protein accession | NP_790154 |
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| Protein GI | 28867535 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAAAAGC AGTCCCCTAC CGCCCTACCC GGCACGCCGA TCACTGATAT GCCTGCAGCC
GCAGAAACCC TGTTAGCCCT GATGCACGCC CAGGCAGAAG TCGCACGCCT GAGCGAGCGC
GAACAATTGT TCAGCTCGTT GCTGGTGAGT GTGAACGCGG TTCTGTGGGC GTTCGACTGG
GAAACCCAGC GCATGATCTA CGTCAGCCCG GCTTACGAGC ACATTTTCGG TCGCTCGGCC
GGGCTGCTGC TGGCTGACTA CAGCGAGTGG CGCGACAGCA TCTACCCCGA CGACCTGAAT
TACGCCGAGC GCAGCTTGAG CGAAGTCATC GAGAAAGGCG CTGTCGAGGA CCGCGAGTAC
CGCATCATTC GCGCCGACGG CGAAGTGCGC TGGCTCAGTG ACAAATGCTT CGTCAGCCAC
CGCGCCGACG CCAGTCAGCG CCTGATTGTG GTGGGCATTG CCGAAGACAT CACCGACAAA
AAGCACCTCG AAGATGAGCT GCAGCGCCTG GCCACGACCG ACGTACTGAC CCAAAGCAGC
AACCGCCGGC ACTTTTTCGA GTGCGCCCAG CGCGAGTTCG AACTGGCTCG CCTCAACGGC
ACGCCGCTGG CCTTCCTGTT GCTGGACATC GATGACTTCA AACTGGTGAA CGACACCTAC
GGCCACCAGG AAGGCGACAC CGTGCTGCAA CGCATCGCAG AAAGCGGCCG CTCGGCATTG
CGGCGTGGCG ATCTGTTCGG CCGGATCGGC GGCGAGGAGT TTGCAGCGGT GTTTCCTGGC
TGCGCACCGG AGATGGCCAT GCAGATCGCC GAACGCTTGC AACGCGAGAT CCAGCGCCAG
AACTTCCAGG CAAATGGCAG CACCTTCAGC ATCACCGCCA GCCAGGGCCT GACCAATCTT
GGCCCAGAAG ACCAAGGCCT GGAAGCCCTC TACGGCCGCG CCGATGCAGC GATGTATCAG
GCCAAGCGCC AGGGCAAGAA TCAGATTGTG CTGGTGTGA
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| Protein sequence | MEKQSPTALP GTPITDMPAA AETLLALMHA QAEVARLSER EQLFSSLLVS VNAVLWAFDW
ETQRMIYVSP AYEHIFGRSA GLLLADYSEW RDSIYPDDLN YAERSLSEVI EKGAVEDREY
RIIRADGEVR WLSDKCFVSH RADASQRLIV VGIAEDITDK KHLEDELQRL ATTDVLTQSS
NRRHFFECAQ REFELARLNG TPLAFLLLDI DDFKLVNDTY GHQEGDTVLQ RIAESGRSAL
RRGDLFGRIG GEEFAAVFPG CAPEMAMQIA ERLQREIQRQ NFQANGSTFS ITASQGLTNL
GPEDQGLEAL YGRADAAMYQ AKRQGKNQIV LV
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