| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0275 |
|---|
| Symbol | |
|---|
| ID | 1181883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 301329 |
|---|
| End bp | 302462 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637391644 |
|---|
| Product | DNA-binding protein |
|---|
| Protein accession | NP_790126 |
|---|
| Protein GI | 28867507 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2856] Predicted Zn peptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAG CCGCATTTGT TAATCCAAGC ATCCTCACGT GGTCCCGAGA ACGTGCGGGG
CTTTCTGCTG CACAGGTCGC TAGAAAGCTG CCCGTAAAGC CTGAGCGGGT CGAGGAATGG
GAATCGGGCG AGGCAAGGCC AACCTTTCTG CAAGCCCAAA AATGGGCAAG CGTCGCGCAC
GTTCCTTTCG GCTTCCTGTT CCTGCTTCAG CCTCCTGTTG AGCAGCTTCC GCTGCCAGAC
CTGCGCACGG TCGGTAACTC GGCGCCATTG CGGCCGAGTC TGGAGCTTTT GGACACAGTA
AAAGACGCGA TCCGCAAACA GGACTGGTAT CTGGAATACC TCCATGTGCA GGAGCGTCAG
CCTCTTCCAT TCGTGGGTCG CTTTGACAGC CGGACGCCGG TGAAGACGGT TGTGAGCGAT
ATTCGGCAAA CCCTGGGCGT CGATCCGGAA AAATCCCGCC TCGATTACGA TAAATACAGC
CGCGCGCTGA TTGATGCTGC CGAAGTGGCT GGCGTGCTTG TCATGCGCAG TGGCATTGCG
CTGGGCAACA CACACCGGAA ACTGGAAGTC AGTGAATTTC GAGGCTTCGC CATCAGTAAC
CCACTGGCAC CGGTGGTGTT CATCAACAGC TCTGATGCTC CAACAGCTCG GCTATTCACG
TTGATGCATG AACTCGCTCA TATCTGGATT GGCAGCAGCG GCGTTTCTGA TGCAGGTACT
GCTAACGGTC GAGAGGAAGA GCGATTCTGT AATGCTGTGG CAGGTGAGTT TCTTGTGCCC
GAAGCGCTTT TTCGTACCGT ATGGAGCGCC AGTATTGAGT GGGAAAGTAA TCTGGCCACG
CTCGCCACGC GGTTCCATGT CAGCAAACTT GTCATTGGTC GACGCGCGAT GGACCTGGGC
TACGTAACGC AAGAACAGTA CGGCGCGTAT TACCAGAAGA TCCTGAAAGC ATTCCGGGAC
GAGAAAGGCG GGGCTGAGGA TTACTACCGC AATGCAACGG CCAAAAACAG TACGCGTTTG
AGTAAGGCTG TATTGACCGA AACCCTGAGT GGCCGGATGC TGCTGCGTGA AGCAGGCAAT
CTGCTCGGCG TACAGCCTGC CAAGTTAAGA ACGCTGGCCG CTGAACACCT TTGA
|
|---|
| Protein sequence | MSQAAFVNPS ILTWSRERAG LSAAQVARKL PVKPERVEEW ESGEARPTFL QAQKWASVAH
VPFGFLFLLQ PPVEQLPLPD LRTVGNSAPL RPSLELLDTV KDAIRKQDWY LEYLHVQERQ
PLPFVGRFDS RTPVKTVVSD IRQTLGVDPE KSRLDYDKYS RALIDAAEVA GVLVMRSGIA
LGNTHRKLEV SEFRGFAISN PLAPVVFINS SDAPTARLFT LMHELAHIWI GSSGVSDAGT
ANGREEERFC NAVAGEFLVP EALFRTVWSA SIEWESNLAT LATRFHVSKL VIGRRAMDLG
YVTQEQYGAY YQKILKAFRD EKGGAEDYYR NATAKNSTRL SKAVLTETLS GRMLLREAGN
LLGVQPAKLR TLAAEHL
|
|---|
| |