Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0271 |
Symbol | |
ID | 1181879 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 296849 |
End bp | 297670 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637391640 |
Product | tonB protein, putative |
Protein accession | NP_790122 |
Protein GI | 28867503 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGATG CGGTAATAAT GAAAGCAGTG CCCGGCCCAT CGCCCGATAT AACACCTACG GCGTGGCAGG GCATTCCTTT CACGGCCAAT ACGTCACGCC CGGGCGGCCT TAACAAGCCG CAAGTCATGG TATTGATTGC TGCGTCGGTA CTTATTCACG GTGTGATCTG GTGGTACATG CAAACGGCGC AGCCAGCACT GCCCGAAGTT GCACCACAGG TTCCGGAAAT GACCATTGAA CTGACCAGCC CGACACCGCC GGCGCCGGAA CCGCCGCCAC CCGAGCCACC ACCTCCGCCT CCCCCGCCGC CGCCACCCGA ACCGGAACAA CCGGTCGAGG ATCCGGACGC CGTGGAGCCG CCGCCCAAGC CGATCGAAAA GCCGAAGGTC GAGAAGCCCA AGCCGGTCAA GAAGCCTGAA CCGGTGAAAA AGCCGACGCC GCCCGCGCCA ACGCCTGCTG CCGCACCGAG CCCGCCTGCG CCGCCAACAC CTGCGCCCGC GCCTGCTGCC CCTGCTGCGC CGCCTGCACC GGCCAAGGAA AGTGCGGCTG TTTCCGGGCT CGCCAGCCTG GGCAATCCGC CACCGGAGTA TCCGGGGCTG GCCTTGCGCC GCAGTTGGGA AGGTCGCGTG ATTCTGCGCA TCAAGGTGCT GCCCAACGGC CGCGCTGGTT CGGTCGAGGT GACCAAATCC AGCGGCAAAC CGGCACTAGA CGATGCCGCC GTGGAGGCCG TGCGCAACTG GAAGTTTATC CCGGCCAAAC GTGGCGATAC GCCGATAGAA GGCTTCGCGA CGCAGACCAT CGACTTCAAG CTGCCGGAAT GA
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Protein sequence | MNDAVIMKAV PGPSPDITPT AWQGIPFTAN TSRPGGLNKP QVMVLIAASV LIHGVIWWYM QTAQPALPEV APQVPEMTIE LTSPTPPAPE PPPPEPPPPP PPPPPPEPEQ PVEDPDAVEP PPKPIEKPKV EKPKPVKKPE PVKKPTPPAP TPAAAPSPPA PPTPAPAPAA PAAPPAPAKE SAAVSGLASL GNPPPEYPGL ALRRSWEGRV ILRIKVLPNG RAGSVEVTKS SGKPALDDAA VEAVRNWKFI PAKRGDTPIE GFATQTIDFK LPE
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