| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0267 |
|---|
| Symbol | |
|---|
| ID | 1181875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 290737 |
|---|
| End bp | 292653 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637391636 |
|---|
| Product | bacterial extracellular solute-binding protein, family 5 |
|---|
| Protein accession | NP_790118 |
|---|
| Protein GI | 28867499 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCATTCA GTGCGTACGA GGAAAGCCCC ACCATGTTGC GTCATACCCG TTTGTTGCAG
CGCCTGATTC TGGGTGTTGC GCTATTGAGT GGCTGGCAGG TCACGCAGGC CGCGCCGACC
CACGCCTTGA CTGTCTACGG CGAGGCACCC AAATACCCGG CTGGCTTTCA GCACTTCGAC
TACGTCAACC CGAACGCTCC CAAAGGCGGT TCACTGACGC GCTCGGCGGA AGAAATCGGC
CAGTTCAACT ACCTCAATCC TTATGTCGAT CAGGGCATCA ATGTGCGGGA GGTCGATAGC
TGGGTTTATT CACCCTTGGC CTATCGCTCG CTGGATGAGC CGTACACCGT TTATGGCTTG
ATCGCGGAAA AGATGGAGAT GGACCCGAAC GGTCTGTGGA TTCGTTTTTT CCTCAACCCC
AAGGCACGTT TCGAGGACGG CAAGCCCGTC ACTGCGCAAG ACGTGCGCTA CACCTTCGAG
CTGATGACCA CCAAGGCCAG CTTCAGCTAT CGCCCCATGT TCGCCGACGT CAAAGAGGTG
ATCATCGAGG GGCCGCTACA GATTCGCTTC GACTTCAAGA ACAACCTCAA CCGCATGCTG
GCGCTGGACA TTGCCAGCCT GCACATCCTG CCGGAGCACT GGTGGAAGAG CCGCGACTTC
GCCAACGGCG GCGGTTTCGA GCCGCCGCTG GGCAACGGGC CTTACCGGGT CGCCAAGGTC
GATGCCGGGC GCAGCGTGGC CTTTGAACGG GTCAAGGACT GGTGGGGCAA GGACCTGCCG
GTCAGCCGTG GCCTGTACAA CTTCGACAGC CTGACCGTGA ACTACTACGG CGACACCGAA
ATCGCCCGGC AACTGCTGCA GGCCGGGGCC TTCGACTATA ACCGGGAGTT TTCCTCCTCA
GGTTTCGTGG TCGGTTACAG CGGCCCGGCG ATTGACGACG GGCGTCTGCA AAAAAACATC
TTCGCCCAAC AACGCCCGGT CGCCGCGCAG GGTTTTGTGT TCAATCTGGA CAACCCGATC
TTCAAGGACC GCCGCGTGCG TGAAGCGCTG TCATTGCTGT GGGACTTCGA CTGGATCAAC
CGCCGGGTCA TGCGCAATTT CTACGTGCGC GAGCAGAGCT ACTTTCCGAA AAGCGACATG
GCCGCCACCG CGCTGCCGAC GCCCGCCGAA CTGAAGATTC TCGAACCATT GCGCGCTCAG
GTGCCGGACG AGGTGTTCAC TACGGTGTAT CAACCGCCTA AAACCGATGG CAGTGGTTAC
ATCCGTGACA AACAGTTGCA GGCCCTCAAA CTGCTGGCCG AGGCCGGCTG GCACCCCAAA
GACAACAAGC TGGTCAACGC GGCGGGCGAG CCGATGGTGT TCAGTTTTCT CGACGGTCAG
GGCGGTTTCG ACCGACTGAT TCTGCCCTTC AAACGCACCC TGGCGCAGAT CGGCATCACC
CTGGATTTTT TGCGCATCGA TTCGGCGCAG TACATCAACC GGCTCAATGC ACGGGACTAC
GACATGATCG TGGTGACATT GCCGAAAAAC GGCAACCCGA TCATTTCTCC AGGCCGCGAA
CTGTACAACC TGTACGGCTC GCAAAGCGCC ACGGAGGTGG GCAGTTCCAA CGCGATGGTG
CTGCGCAACC CGGCAGTGGA CACGCTGATC GACGGGCTGG TGAGCGCCAA CACGCGCAAC
GACATGGTGA CCTATGCCCG CGCGCTGGAT CGGGTCCTGC AATGGGGCTA CTACATGATT
CCCAATTACT ACTCCAAAGG CACGCCGCTG GTGTTCGCCA ACCGTTTTGG CATGCCTGCG
GTGGCGCCGA TTTACGACGT GGGCCTGGAA ACCTGGTGGC AGATCAGCCC GACCCCGCTG
ACCAATGCTC AGGCTGCTGC GCTTGCCGGC AAGACCACCG CTGCGAAGGA GCATTGA
|
|---|
| Protein sequence | MSFSAYEESP TMLRHTRLLQ RLILGVALLS GWQVTQAAPT HALTVYGEAP KYPAGFQHFD
YVNPNAPKGG SLTRSAEEIG QFNYLNPYVD QGINVREVDS WVYSPLAYRS LDEPYTVYGL
IAEKMEMDPN GLWIRFFLNP KARFEDGKPV TAQDVRYTFE LMTTKASFSY RPMFADVKEV
IIEGPLQIRF DFKNNLNRML ALDIASLHIL PEHWWKSRDF ANGGGFEPPL GNGPYRVAKV
DAGRSVAFER VKDWWGKDLP VSRGLYNFDS LTVNYYGDTE IARQLLQAGA FDYNREFSSS
GFVVGYSGPA IDDGRLQKNI FAQQRPVAAQ GFVFNLDNPI FKDRRVREAL SLLWDFDWIN
RRVMRNFYVR EQSYFPKSDM AATALPTPAE LKILEPLRAQ VPDEVFTTVY QPPKTDGSGY
IRDKQLQALK LLAEAGWHPK DNKLVNAAGE PMVFSFLDGQ GGFDRLILPF KRTLAQIGIT
LDFLRIDSAQ YINRLNARDY DMIVVTLPKN GNPIISPGRE LYNLYGSQSA TEVGSSNAMV
LRNPAVDTLI DGLVSANTRN DMVTYARALD RVLQWGYYMI PNYYSKGTPL VFANRFGMPA
VAPIYDVGLE TWWQISPTPL TNAQAAALAG KTTAAKEH
|
|---|
| |