| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0259 |
|---|
| Symbol | gabT-1 |
|---|
| ID | 1181867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 282043 |
|---|
| End bp | 283347 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637391628 |
|---|
| Product | 4-aminobutyrate aminotransferase |
|---|
| Protein accession | NP_790110 |
|---|
| Protein GI | 28867491 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
|---|
| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGCA AAGTCGACGA AACTCCTCAT CTGCTCCGCC AGCGCGACCA GTTTGTGCCG
CGTGGCATCG TCACAGCCCA CCCGTTGGTT ATCGACCGCG CCCAGGGCTC TGAACTGTGG
GACGTCGACG GCAAGCGCTA TCTGGATTTC GTCGGCGGCA TCGGCGTCTT GAACATCGGC
CACAACCACC CGAACGTGGT CAAGGCGATT CAGGCACAAC TGAGCAAAGT CACCCACGCC
TGCTTTCAGG TGGCGTCCTA TCAGCCCTAC CTGGATCTGG CCAAACGCCT GAGCCTGATG
ATCGCCGGCC AGAGCGGTAT TGATCACAAA GCGGTGTTCT TCACCTCCGG CGCCGAAGCG
GTGGAAAACG CGGTGAAAAT AGCCCGCGCG CGCACCAATC GCCCGGCGAT CATCTCGTTC
CGTGGTGGCT TCCACGGCCG TACGTTGCTC GGCACTACGC TGACCGGTAT GAGCCAGCCG
TACAAACAGA ATTTCGGCCC GATGGCGCCG GAAGTGTTCC ACACCCCGTA CCCGAACGAG
TACCGCGGCG TGACCACCGA AGTGGCCCTG GCTGCGCTGC ATGAACTGCT GGCGACCCAG
GTCGCGCCGG ATCGCGTCGC GGCCATCCTG ATCGAGCCGA TTCAGGGTGA CGGCGGCTTT
CTGACTGCTC CGGTCGAATT CCTCAAGGCC CTGCGCGCGT TGACTGAACA ACACGGCATC
GTGCTGATTC TCGATGAAAT CCAGACCGGG TTTGGTCGAA CCGGCAAGTG GTTCGGTTTC
GAGCACGCCG GTATCCAGCC GGACCTGGTG ACGGTTGCCA AGAGCCTCGC GGGCGGCATG
CCGCTGTCGG GCGTGGTCGG GCGTGCCGAG ATTATGGATG CACCGCTTCC GGGCGGTCTG
GGGGGCACTT ACGGCGGCAA TGCGCTGTCC TGCGCCGCAG CGCTGGCCGT AATCGATACT
TACGAGCAGG ACAATCTGCT GGCGCGTGGC GAACAGTTGG GCGAGCACCT GCGTGCCGGT
TTGCTCAGGC TCAAGGACCG CTACGCCTGC ATCGGCGACG TACGCGGCAC CGGTTTCATG
CTGGCGATGG AGCTGACCAA GAACGACGCT GCACGCAGCC CGGACGCTGA TCTCAACCAG
AAAGTCATCG ATCAGGCGCG CATCGGCGGC CTGCTGGTGA TCAAGTGCGG TGTGTACCGC
AACGTGTTGC GTTTTCTCGC ACCGCTGGTG ACCACCGAGC AGCAGATCGA TGAAGCACTG
AGCATTCTCG ATGCCGCCTT GGCACGAGTA TTGAAGTCCA GCTAA
|
|---|
| Protein sequence | MNSKVDETPH LLRQRDQFVP RGIVTAHPLV IDRAQGSELW DVDGKRYLDF VGGIGVLNIG
HNHPNVVKAI QAQLSKVTHA CFQVASYQPY LDLAKRLSLM IAGQSGIDHK AVFFTSGAEA
VENAVKIARA RTNRPAIISF RGGFHGRTLL GTTLTGMSQP YKQNFGPMAP EVFHTPYPNE
YRGVTTEVAL AALHELLATQ VAPDRVAAIL IEPIQGDGGF LTAPVEFLKA LRALTEQHGI
VLILDEIQTG FGRTGKWFGF EHAGIQPDLV TVAKSLAGGM PLSGVVGRAE IMDAPLPGGL
GGTYGGNALS CAAALAVIDT YEQDNLLARG EQLGEHLRAG LLRLKDRYAC IGDVRGTGFM
LAMELTKNDA ARSPDADLNQ KVIDQARIGG LLVIKCGVYR NVLRFLAPLV TTEQQIDEAL
SILDAALARV LKSS
|
|---|
| |