| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0258 |
|---|
| Symbol | |
|---|
| ID | 1181866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 280829 |
|---|
| End bp | 281794 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637391627 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase family protein |
|---|
| Protein accession | NP_790109 |
|---|
| Protein GI | 28867490 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGGC TCCACTTTCA TACTCAGGAA ATGCCCATGC CCGCCCTGCT CTACAAAGCC
GACCCCGCAC GTGCAGAACG CTGGCGTGTC CTGTTTGCCG AGCACGCGCC GGACATCGAA
TGGCGCGTAT GGCCGGACAT CGGTGACCCG GCCGATATCC ACTATCTGGG TGCCTGGCTG
GCACCTGATG ACCTGCAGGA CCTGTTGCCC AACCTGAAAG TGCTGTTTGC GCTGTCGGCT
GGCGTGGATC AACTGGACCT GAGCCGTATT CCCAAGTCGT TGCCGGTGGT TCGCCTGCTC
GACCCCGGCA TCAGCCACGG GATGTGCGAG TACGCATCTT TTGCGGTGCT GAGCCTGCAC
CGGGAAATGC TGCGCTATCG TCAGCAGCAG GTTGAAGGGC TCTGGAAAGC CCAGCCGTTG
ATACCGGCGA ACAAGCGTCG AGTGGGCGTG ATGGGGTTGG GCTTGCAGGC GCAGCATATT
CTGTCGAGCC TCAAACCGTT CGGTTTCCAG CTGTCAGGCT GGGCGCGCAG TGCGCATCAG
GTCGAAGGTG TGACGTGTTA TGCGGGCGAG GAGCAGTTGA GCGAGTTTCT TGGGCAGTGC
GACATTCTGC TGTGTGTGCT GCCTTTGACT GCGCAAACCG AAGGCATCCT CAACCGCCAG
CTTTTCGAGC GCCTGCCCGA AGGTGCCGCC CTGATCAACA TGGGCCGTGG TGGGCATCTG
GTGGAGGCCG ATCTGCTTGA AGCACTGGAC AGCGGCCAAC TCAGCGCGGC GGTGCTGGAT
GTGTTGCAGC AAGAGCCAGC ACCTGCCGAC CATCCATTCT GGCAACACCC GAAAATCCTG
CTGACACCGC ACGTCGCGGC CATGACCCAA CCGGAAAGCG CCTTCCCCGG CCTGCTCGAC
AACATCCGCC GCTTTGAGCG CGGAGAAGCG ATGCAAGGAC AGGTTAATCG CGGGCAGGGT
TATTGA
|
|---|
| Protein sequence | MMRLHFHTQE MPMPALLYKA DPARAERWRV LFAEHAPDIE WRVWPDIGDP ADIHYLGAWL
APDDLQDLLP NLKVLFALSA GVDQLDLSRI PKSLPVVRLL DPGISHGMCE YASFAVLSLH
REMLRYRQQQ VEGLWKAQPL IPANKRRVGV MGLGLQAQHI LSSLKPFGFQ LSGWARSAHQ
VEGVTCYAGE EQLSEFLGQC DILLCVLPLT AQTEGILNRQ LFERLPEGAA LINMGRGGHL
VEADLLEALD SGQLSAAVLD VLQQEPAPAD HPFWQHPKIL LTPHVAAMTQ PESAFPGLLD
NIRRFERGEA MQGQVNRGQG Y
|
|---|
| |