| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0257 |
|---|
| Symbol | gabD-1 |
|---|
| ID | 1181865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 279109 |
|---|
| End bp | 280566 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637391626 |
|---|
| Product | succinate-semialdehyde dehydrogenase |
|---|
| Protein accession | NP_790108 |
|---|
| Protein GI | 28867489 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGA ATCAGTTGAA AGACCCCAGC CTGCTGGTGG ACCGCGCCTA CGTCGATGGG
CAATGGATCA GCGCTGATGA TGGTGCAACG CTGGCCATCA GCGACCCGGC GACCGGCGAA
GTGATCGCGC AGGTTCCGGC CTTGCAAGGC GCTGAAACCC GCCGCGCCAT CGAGGCCGCT
GATCGTGCCT GGCCTGCCTG GCGCGCGCGT CCTGCCGCCG AGCGTGCGGC GCTACTGGAG
CGCTGGCATC AGGCGATGCT CGACAACGTC GAAGACCTCG CGCTGATCAT GACCCTTGAG
CAGGGCAAGC CGCTGAACGA GTCGCGTGGC GAGATCCGCT ATGGCGCAAG CTTCGTCAAA
TGGTTCGCTG AAGAAGCGCG CCGCTCGTAC GGTGAAACCA TTCCCACGCC CAGCGCTGAT
CGTCGTTTGA TGACGCTCAA ACAGCCGGTC GGTGTCTGCG CCGCGATCAC CCCGTGGAAT
TTCCCCAACG CCATGATCAC CCGCAAATGC GCGCCAGCTC TGGCTGCAGG CTGCACGATC
ATCGTCAAAC CGTCGGACCT CACGCCGCTG TCGGCGCTGG CGCTGGCAGT GCTGGCCGAG
CGCGCGGGCA TTCCTGTTGG TGTGTTCAGC GTCGTCACCG GCATGCCGAC CGCCATCGGC
GAAGAGCTGA CCGGCAACCC GGTGGTGCGC AAGATTTCCT TCACCGGCTC CACGCCGATC
GGCCGTCTGC TGATGCGCCA GAGCGCCGAA CACATCAAGC GCCTGAGCCT GGAACTGGGG
GGCAACGCGC CGTTCATCGT GTTTGACGAC GCTGATCTGG AGCAGGCTGT GGCCGGCATT
ATGCTCAGCA AATTCCGCAA CGCCGGGCAA ACGTGCGTGT GCGCCAACCG GATTCTGGTG
CAGAGCGGCA TTTACGACCG TTTCGCTGCG CGGCTGGTGG AAGAAGTCGC CAAACTCAAG
GTCGGCAACG GTCTGGAAGA GGGCGTGACC ATCGGCCCGT TGATTAATCC GGCAGCGGTC
AGCAAAATTG CCCGGCACAT CGACGATGCG CTGAGCCAGG GCGCGAAGTT GCTGTACGGC
GGGTTGCCCA ACGGTGACGG CCAGTTCGTC CAGCCAACGG TATTGGGTGA TACCCATGCG
GGCATGCTGC TGGCCAACGA AGAAACCTTC GGCCCGGTTG CCCCGCTGAT GCGTTTCACC
GACGAAGCCG AGGCCCTCGC ACTGGCCAAC GCAACGCCCT ACGGCCTTGC CGCTTACTAC
TTCACCCAGG ACCTGCGTCG CTCATGGCGT TTCGGCGAAG CGCTGGAATT CGGCATGGTC
GGCCTCAACA CCGGCATCAT CTCCATGGAA ATCGCCCCCT TCGGCGGCAT CAAACAATCC
GGCCTGGGCC GCGAAGGCTC CAGCTACGGC CTGGATGAAT ACCTGGAAGT GAAGGCGTTT
CATGTGGGTG GGTTGTAG
|
|---|
| Protein sequence | MLKNQLKDPS LLVDRAYVDG QWISADDGAT LAISDPATGE VIAQVPALQG AETRRAIEAA
DRAWPAWRAR PAAERAALLE RWHQAMLDNV EDLALIMTLE QGKPLNESRG EIRYGASFVK
WFAEEARRSY GETIPTPSAD RRLMTLKQPV GVCAAITPWN FPNAMITRKC APALAAGCTI
IVKPSDLTPL SALALAVLAE RAGIPVGVFS VVTGMPTAIG EELTGNPVVR KISFTGSTPI
GRLLMRQSAE HIKRLSLELG GNAPFIVFDD ADLEQAVAGI MLSKFRNAGQ TCVCANRILV
QSGIYDRFAA RLVEEVAKLK VGNGLEEGVT IGPLINPAAV SKIARHIDDA LSQGAKLLYG
GLPNGDGQFV QPTVLGDTHA GMLLANEETF GPVAPLMRFT DEAEALALAN ATPYGLAAYY
FTQDLRRSWR FGEALEFGMV GLNTGIISME IAPFGGIKQS GLGREGSSYG LDEYLEVKAF
HVGGL
|
|---|
| |