| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0249 |
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| Symbol | |
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| ID | 1181857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 269650 |
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| End bp | 271287 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637391618 |
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| Product | peptide ABC transporter, periplasmic peptide-binding protein |
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| Protein accession | NP_790100 |
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| Protein GI | 28867481 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGACA ATAAAACCGA CTCCCAGTTG ATCACAGGCC AAGACAGCCT GCGTGTTTTC
GAGGGTCTCA ATCGTGGTCT GTCACGTCGC GATGCACTGC GTATGCTGGG TGTCGCAGGT
GTGGTTGCCG CCGGCTCCAC CAGCCTGTTC GGTGCGGCGG GCAAGGTCTT TGCCGATGAC
GCCGATACGC CTGTCAAAGG CAAGCCAGGC GGTCGTATCC GTGTGGCGGG CATGTCCAGT
TCCACCGCCG ACACACTGGA CCCGGCCAAA GGCGCACTGT CCACCGACTA CGTTCGCCAT
TTCATGTTCT ACAACGGCCT GACCCGTTTC GACAGCCACC TGGTTCCGCA CATGGAACTG
GCCGAGAAAA TCGAGAGCGA CAACGCTACC GTCTGGACCG TGACCCTGCG CCAGGGCGTG
ACCTTCCACA ACGGCAAAGC GTTGACCGCA GGCGATGTGG TGTTCTCCCT GTCGCGCCAC
AAAGACCCGG CCACCGGCTC GAAAGTCCTG CCGCTGATGG CGCAGTTCTC CGAGATCAAG
GCCACCGGCC CGATGGAAGT GCAGATCACC CTCAGCTCGC CGAACGCCGA GTTGCCGTCG
ATCCTCGCGG TTTCGCACCT GCTGATCGTG CCCGAAGGCA CCACCGACTT CAGCAAAGGC
ATCGGCACCG GCCCGTTCAC CGTCAAGGAA TTCAACCCTG ACGTGCGTTC GGTCAGTGCG
CGTAACCCCA ACTACTGGAA GCCGGGCCTG CCATACCTGG ACGAAATCGA ATTCATCGCC
ATTTCCGATG AGCCATCGCG GGTCAACGCG CTGCTCTCCG GCGACGTGCA CATGATCAAC
GAGGTCAACC CGCGTTCCAC CACGCGCATT GCTGCCAGCG CCAGGCACCG CGTGGTGGAT
GCGCCGTCCG GCAACTACAC CGACCTGATC ATTCGTCAGG ATCAAATGCC CGGCAAGAGC
CCGGAATTCA CCGAGGCCAT GAAGCACCTG CTGGACCGCG AACAGGTCAA ATCGGCTGTG
TTCCGTGGCT ATGCCCGCGT GGGTAACGAC CACCCGATTG CGCCTGGCTC GCGTTACTTC
AACGCCGACT TGCCACAACG CGCCTACGAT CCTGAAAAGG CCAGGTTCCT GCTCAAAAAA
GCGGGCATGG AAAAGATCAC CATGGCCGTG GCGGCATCGC CTGCCGCGAC CGGTTCGGTG
GACATCGCCG TGCTGCTGCA ACAATCCGCC AAACAGGCCG GCCTGACCCT CAACGTCAAC
CGCCTGCCGA GCGATGGCTA CTGGTCCAAC CACTGGATGA AGCACCCGCT GAGCTTCGGC
AACATCAACC CGCGCCCGAA CGCCGACGTG ATCTTCTCGC AGTTCTTCCA GTCCTCCGCA
CCGTGGAACG AATCGGGCTG GAAAAACGAT CAGTTCGACC AGTTGCTGCT GCTGGCCCGT
GGCGAAACCG ACGACGCCAA GCGCGCCAAA ATGTATGGCG ACATGCAGAC TCTGGTCAGC
CAGAACTGCG GCATCGGCAT CCCTGTGTTC ATCAGCAACA TCGACGGCGT GGACAAGCGT
ATCCAGGGCT ATTCCAGCAA CCCGCTGGGC GGCTTCATGG GCTACATGTT CAGCGAGCAG
GTCTGGCTGG ACGCGTAA
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| Protein sequence | MADNKTDSQL ITGQDSLRVF EGLNRGLSRR DALRMLGVAG VVAAGSTSLF GAAGKVFADD
ADTPVKGKPG GRIRVAGMSS STADTLDPAK GALSTDYVRH FMFYNGLTRF DSHLVPHMEL
AEKIESDNAT VWTVTLRQGV TFHNGKALTA GDVVFSLSRH KDPATGSKVL PLMAQFSEIK
ATGPMEVQIT LSSPNAELPS ILAVSHLLIV PEGTTDFSKG IGTGPFTVKE FNPDVRSVSA
RNPNYWKPGL PYLDEIEFIA ISDEPSRVNA LLSGDVHMIN EVNPRSTTRI AASARHRVVD
APSGNYTDLI IRQDQMPGKS PEFTEAMKHL LDREQVKSAV FRGYARVGND HPIAPGSRYF
NADLPQRAYD PEKARFLLKK AGMEKITMAV AASPAATGSV DIAVLLQQSA KQAGLTLNVN
RLPSDGYWSN HWMKHPLSFG NINPRPNADV IFSQFFQSSA PWNESGWKND QFDQLLLLAR
GETDDAKRAK MYGDMQTLVS QNCGIGIPVF ISNIDGVDKR IQGYSSNPLG GFMGYMFSEQ
VWLDA
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