| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0222 |
|---|
| Symbol | xerC |
|---|
| ID | 1181830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 243920 |
|---|
| End bp | 244819 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637391591 |
|---|
| Product | integrase/recombinase XerC |
|---|
| Protein accession | NP_790073 |
|---|
| Protein GI | 28867454 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4973] Site-specific recombinase XerC |
|---|
| TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAACAGC ATCTGGACGC CTACTGCATG CACCTGCGCA GTGAGCGCCA GGTGTCGCCG
CACACACTTG AAGCCTACCG ACGCGACCTG AGCAAGGTTC TGGCGTATTG CCAGAAAGCC
CGGCTGTCGA GCTGGAATGA TCTGGATATC CAGCACCTGC GCAGCTTCAC CGCCCGCCAG
CATCAGCAAG GCCAGTCCTC GCGCAGCCTG GCGAGAATGC TGTCGGCAGT GCGCGGCTTC
TACAAGTACC TGAACCGTGA AGGCCTCTGC CAGCACGACC CTGCCAACGG CCTGTCTCCG
CCCAAAGGCG AACGACGCCT GCCCAAGACG CTGGATACCG ACCGCACGGC GCAATTGCTG
GACGGTGGCG TTGAAGATGA TTTTCTGGCT CATCGCGATC AGGCCATCAT GGAGCTGCTT
TACTCATCAG GGTTGCGGCT GTCCGAACTG ACCGGCTTGA ACCTCGACCA ACTGGACCTG
CGCGACGGGC TGGTGCAGGT GCTGGGCAAA GGCAGCAAGA CCCGCGTATT GCCGGTCGGC
AGCAAGGCAC GCCAGGCACT GGAAACCTGG CTGCCGCTTC GCGCCCTGAC CAACCCGCAG
GACGACGCCG TGTTCGTCAG CCAGCAAGGC AAACGCCTCG GCCCGCGCGC CGTTCAACTG
CGGATCAAGA CCGCCGGTGA GCGCGAACTG GGGCAGAACC TGCACCCGCA CATGCTGCGT
CACTCCTTTG CCAGCCATCT GCTGGAGTCG TCACAGGACT TGCGCGCGGT GCAGGAACTG
CTCGGTCACG CGGACATCAA GACCACGCAG ATATACACGC ACCTGGACTT CCAGCACCTG
GCCACTGTCT ATGACAGTGC CCACCCCCGA GCCAAGCGTA AAGGAGCTGC AGATGATTAA
|
|---|
| Protein sequence | MEQHLDAYCM HLRSERQVSP HTLEAYRRDL SKVLAYCQKA RLSSWNDLDI QHLRSFTARQ
HQQGQSSRSL ARMLSAVRGF YKYLNREGLC QHDPANGLSP PKGERRLPKT LDTDRTAQLL
DGGVEDDFLA HRDQAIMELL YSSGLRLSEL TGLNLDQLDL RDGLVQVLGK GSKTRVLPVG
SKARQALETW LPLRALTNPQ DDAVFVSQQG KRLGPRAVQL RIKTAGEREL GQNLHPHMLR
HSFASHLLES SQDLRAVQEL LGHADIKTTQ IYTHLDFQHL ATVYDSAHPR AKRKGAADD
|
|---|
| |