Gene PSPTO_0177 details

Gene Information

• Locus tag: PSPTO_0177
• Symbol: def-1
• ID: 1181785
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 198474
• End bp: 198980
• Gene Length: 507 bp
• Protein Length: 168 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 637391554
• Product: polypeptide deformylase
• Protein accession: NP_790036
• Protein GI: 28867417
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCATTC TAAACATCCT CGAATTTCCC GATTCGCGCC TGCGCACCCT CGCCAAGCCT 
GTAGCGATGG TAGACGACGG CATTCGCCAG TTGGTCGACG ACATGTTTGA AACCATGTAC 
GAAGCGCCCG GCATCGGCCT GGCTGCCACG CAGGTCAACG TTCACAAGCG CGTGGTCGTC 
ATGGACCTGA GCGAAGACCG CAGCGCGCCG ATGGTCTTCA TCAACCCTGA AATCGAAAAA 
CTGACCGATG AAATGGATCA GTATCAGGAA GGCTGCCTGT CGGTGCCGGG TTTCTACGAG 
AACGTCGACC GCCCGCAAAA AGTCCGCGTC AAGGCGCTGG ACCGCGACGG CAAGCCTTAT 
GAACTGGTTG CCGAAGGCCT GCTGGCCATC TGCATCCAGC ATGAGTGTGA TCACCTGAAC 
GGCAAGCTGT TCGTCGATTA CCTCTCCAAC CTCAAGCGTG ACCGGATCAA GAAAAAGCTC 
GAAAAACAGC ACAAGCTGAA TGCCTGA 

 

Protein sequence

MAILNILEFP DSRLRTLAKP VAMVDDGIRQ LVDDMFETMY EAPGIGLAAT QVNVHKRVVV 
MDLSEDRSAP MVFINPEIEK LTDEMDQYQE GCLSVPGFYE NVDRPQKVRV KALDRDGKPY 
ELVAEGLLAI CIQHECDHLN GKLFVDYLSN LKRDRIKKKL EKQHKLNA