Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0176 |
Symbol | |
ID | 1181784 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 197323 |
End bp | 198348 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637391553 |
Product | LysM domain protein |
Protein accession | NP_790035 |
Protein GI | 28867416 |
COG category | [S] Function unknown |
COG ID | [COG1652] Uncharacterized protein containing LysM domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGGAAAT CACTACTCGC CCTGCTGCTG TTGACCGCCA GCGGTCTTGC CCAGGCGCAA GTGCAACTCA GGGAAGGCTA TCCGCAGAGC TACACCGTTG TTGCCGGAGA CACACTCTGG GACATTTCCG GCAAGTTTTT GCGTGAACCG TGGAAGTGGC GCGAGATCTG GCGGGCCAAT CCGCAGGTCC ACGACCCTGA TCTTATCTAC CCCGGTGACA CCCTGGCATT GACCTGGGTG GACGGCCAGC CACGTGTGAC GCTCAACCGT GGCGAGTCGC GCGGCACCAT CAAATTGTCA CCGCGTGTGC GCAGTACACC GATGGTTCAG GCCATTCCAA GTATCCCGCT GGGTGCGATC AATGCCTTTC TGATCAGCAA CCGAATCGTC GACAATGCCG AGCAGTTCGA CAAGGCGCCC TATATCGTTG CCGGCAATGC CGAGCGGGTG CTCAGCGGCA ATGGCGACAG GGCCTATGCC CGCGGCAAAC TGGACCCGAC GCACACCGTC TATGGCATCT TCCGCCAAGG CAAGATCTAC ACTGATGCGC AGACCAAGGA AGTGCTGGGC ATCAACGCTG ATGACATCGG CAGCGCTGAA GTGGTTGCCA CCGAGGGCGA TGTCTCGACC CTTAGCCTGC AGCGTTCCAC GCAGGAAGTG CGTTTGGGCG ACCGGCTGTT CGCCAGCGAA GAACGCTCGA TCAACTCGAC CTTTCTGCCC AGCGCTCCGC AGACCCCCAT AGAAGGTTTG ATTCTGGATG TGCCGCGCGG TGTAACCCAA GTCGCCGTCA TGGATGTGGT CACCCTCAAC AAAGGCAAAC GTGACGGTCT GACCGAAGGC AACGTGCTGG CGATCTACAA AACCAGCGAA ACGGTACGTG ACCGAATCAC CGGCGAACAG GTAAAAATCC CCGACGAACG GGCTGGCCTG CTGATGGTTT TCCGCACTTA CGACAAGCTT AGTTACGCCT TGGTCCTGCA AGCGAACCGA TCTTTGGCCA TCATGGACAA GGTTCGAAAT CCGTAG
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Protein sequence | MRKSLLALLL LTASGLAQAQ VQLREGYPQS YTVVAGDTLW DISGKFLREP WKWREIWRAN PQVHDPDLIY PGDTLALTWV DGQPRVTLNR GESRGTIKLS PRVRSTPMVQ AIPSIPLGAI NAFLISNRIV DNAEQFDKAP YIVAGNAERV LSGNGDRAYA RGKLDPTHTV YGIFRQGKIY TDAQTKEVLG INADDIGSAE VVATEGDVST LSLQRSTQEV RLGDRLFASE ERSINSTFLP SAPQTPIEGL ILDVPRGVTQ VAVMDVVTLN KGKRDGLTEG NVLAIYKTSE TVRDRITGEQ VKIPDERAGL LMVFRTYDKL SYALVLQANR SLAIMDKVRN P
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