Gene PSPTO_0169 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0169 
SymbolaroE 
ID1181777 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp189618 
End bp190442 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content64% 
IMG OID637391546 
Productshikimate 5-dehydrogenase 
Protein accessionNP_790028 
Protein GI28867409 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACCAGT ATGTCGTCTT CGGTAACCCC ATTGGTCATA GCAAGTCGCC GCTGATTCAT 
CGCCTGTTCG CCGAGCAAAC CGGCCAGGCA CTGAATTACC AGACCGCGCT GGCACCGCTG
GACGATTTCA CGGCGTTTGC CCAGGCGTTT TTCCAGACCG GGCGTGGTGC CAACGTGACG
GTGCCGTTCA AGGAGGAGGC GTTTCGCCTG GCCGACAGCC TGACCGAGCG CGGGCAGCGT
GCGGGGGCCG TCAACACCCT GAGCAAGCTC GATGACGGGA CGCTGCTGGG CGACAACACC
GACGGTGCCG GGCTGGTGCG CGACCTGACG GTCAATTGCG CATGCAGCTT GCGCGGTCAG
CGCGTGTTGT TGCTGGGCGC GGGCGGTGCG GTGCGTGGCG CGCTGGAACC GCTGCTGGCA
GAAAAGCCCG CCGTACTGGT GATCGCCAAT CGTACGGTCG AAAAAGCCGA ACGACTGGCT
CAGGAATTTG CCGATCTCGG CCCGGTGTTT GCCAGCAGCT TCGACTGGCT TGAAGAGCCG
GTGGACCTGA TCATCAACGC CACGTCTGCC AGCCTGGCCG GGGAGCTGCC GCCCATCTCC
CCGAGCCTGA TCCAGCCTGG TGCGACCTTT TGCTACGACA TGATGTACAG CAAAGCGCCC
ACTGCTTTCT GCCGCTGGGC CACAGAACAG GGTGCGGCGC AGTCGGTTGA TGGCCTGGGG
ATGCTGGTCG AGCAGGCGGC AGAAGCCTTC CTGTTGTGGC GCGGCGTGCG CCCGGATTCA
GCGCCTGTAT TGGCGGAGTT GCGCAGATTG CTGGCTGCGG GTTGA
 
Protein sequence
MDQYVVFGNP IGHSKSPLIH RLFAEQTGQA LNYQTALAPL DDFTAFAQAF FQTGRGANVT 
VPFKEEAFRL ADSLTERGQR AGAVNTLSKL DDGTLLGDNT DGAGLVRDLT VNCACSLRGQ
RVLLLGAGGA VRGALEPLLA EKPAVLVIAN RTVEKAERLA QEFADLGPVF ASSFDWLEEP
VDLIINATSA SLAGELPPIS PSLIQPGATF CYDMMYSKAP TAFCRWATEQ GAAQSVDGLG
MLVEQAAEAF LLWRGVRPDS APVLAELRRL LAAG