| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0148 |
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| Symbol | |
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| ID | 1181756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 171406 |
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| End bp | 173142 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637391525 |
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| Product | oligopeptide transporter, OPT family |
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| Protein accession | NP_790007 |
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| Protein GI | 28867388 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1297] Predicted membrane protein |
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| TIGRFAM ID | [TIGR00728] oligopeptide transporters, OPT superfamily
[TIGR00733] putative oligopeptide transporter, OPT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTACAG CCCCAACCCC GCAAATCCCC CCGGTCCAGC GCGAACTCAG CCTGCGTGCC
GTCATCACCG GCATCGTTCT GGGCATCCTG CTAACCCCTT CCAATGTCTA CGCAGGCCTG
AAGATCGGCT GGTCGTTCAA CATGTCGATC ATTGCGCTGC TGATCGGTTA CGCCATCTGG
CAAGGGCTGG CCAAACGCTC GCCCCATCAG CCGCCGTGGA CGTTGCACGA GAGCAATATC
AATCAGACGG TAGCGTCGGC GGCGGCGTCG ATTATTTCCG GTGGGTTGGT GGCGCCGATT
CCGGCTTATA CCTTGTTGAC GGGGCAGCAG CTGGATGCGA TTCCGATGAT GGCGTGGGTG
TTTTCGGTGA GTTTTCTGGG GATCTGGATT GCATGGTATT TACGGCCGTC GTTGCTCAAT
GACACATCGC TGAAGTTCCC GGAGGGCATG GCGACGCTGG AGACGCTGCT GCACATCTAC
AACCATGGCC GGGAAGCGGC TACGCGGTTG AAGGTGTTGC TCAATGCTGC GTTGCTGTCC
GGGTTGGCGA AGTGGGTCGA TACGTTTGTG TGGGCATTCC CGCGCTGGTC GCCGAGTGCG
TCGCTGGAGC GTTTGACGTT TACCGCAGAC CCTTCGCTGT TATTGGTGGG GTTCGGTGCA
ATCATCGGCA TTCGTGTGGG GGTGACGCTG TTGCTCGGTG CCTTGCTGGC GTGGGGCGGG
CTGGCGCCGT GGTTATTGGC GCAAGGGCTG GTGACGTTAC CGGCCGGCAG CAGTGGCCCG
CAGTTCGCGG CGCTGGTGGA GTGGTTGCTG TGGCCGGGTG TGAGTTTGAT GGTCTGCTCG
ACGCTGGCGT CGCTCGCGAT TCGTTTATGG GGATTGCACA GGTCCACCAA AGCGAACAGC
GGGACGATCT GGGCCGTGCC TAAGGCGGGG CCGGCACTCG GTCTGCTGTT GTCGATCATT
CTGGTGGTGA GCCTGCAGGC GCTGTTGTTC GGCATCAATC TGTGGATGGC ACTGTTGACC
ATTCCTCTAG CCATTTGCCT GGCAGCGGTG GCCGCCAGGG TGGTTGGTGC GACGGGCATT
CCGCCCATTG GTGCTATCGG GCAGTTATCG CAACTGAGCT TCGGCATCGT CGCGCCAGGG
CAGGTAACGA TCAATCTGAT GAGCGCCAAC ACGGCGGGCG GTTCGGCCGG GCAATGCACC
GATCTGATGA ACGACTTCAA GGTGGGCAAG GCGATCGGGG CCACGCCACG CAAACAGTTG
GTCGCACAGA CGCTGGGGAT TTTCGTCGGC AGTATCGTCG GAGTGCTGGC TTATATGGCG
CTGATTCCAG ACCCGCAAAG CATGTTGCTC ACTGAGGAGT GGCCCGCTCC GGCAGTGGCC
ACCTGGAAGG CTGTGGCGCA AACCCTGACC CACGGGCTGG ACTCGTTATC AGCGAGCATC
CGTTGGGCCA TCTTTATTGC AGGCCTGACG GGCCTGTTGC TTGGGGTACT CGACAGCACG
CTGCCCGCCC GTCGCGCCCG TTACTTGCCA AGCGCCGCTG CGCTGGGCCT GGCGTTTGTC
TTGCCGGCTT CGGTGTCGTT GATGATGGCC CTTGGCGCGG TGCTCACGTG GACAGTCAGC
GGTCGCTGGG CCAGTCTCAC CGAACGTTTC GCGATTACTG CGGCAGCGGG GCTGATCGCC
GGGGAAAGCA TTACCGGAGT GGGGGCGTCG TTGTGGCAGA TGTTTGGTAA TGGGTGA
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| Protein sequence | MPTAPTPQIP PVQRELSLRA VITGIVLGIL LTPSNVYAGL KIGWSFNMSI IALLIGYAIW
QGLAKRSPHQ PPWTLHESNI NQTVASAAAS IISGGLVAPI PAYTLLTGQQ LDAIPMMAWV
FSVSFLGIWI AWYLRPSLLN DTSLKFPEGM ATLETLLHIY NHGREAATRL KVLLNAALLS
GLAKWVDTFV WAFPRWSPSA SLERLTFTAD PSLLLVGFGA IIGIRVGVTL LLGALLAWGG
LAPWLLAQGL VTLPAGSSGP QFAALVEWLL WPGVSLMVCS TLASLAIRLW GLHRSTKANS
GTIWAVPKAG PALGLLLSII LVVSLQALLF GINLWMALLT IPLAICLAAV AARVVGATGI
PPIGAIGQLS QLSFGIVAPG QVTINLMSAN TAGGSAGQCT DLMNDFKVGK AIGATPRKQL
VAQTLGIFVG SIVGVLAYMA LIPDPQSMLL TEEWPAPAVA TWKAVAQTLT HGLDSLSASI
RWAIFIAGLT GLLLGVLDST LPARRARYLP SAAALGLAFV LPASVSLMMA LGAVLTWTVS
GRWASLTERF AITAAAGLIA GESITGVGAS LWQMFGNG
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