Gene PSPTO_0140 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0140 
Symbol 
ID1181748 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp163128 
End bp163760 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content63% 
IMG OID637391517 
Producthomoserine/homoserine lactone efflux protein 
Protein accessionNP_789999 
Protein GI28867380 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACTTG AAACGTGGCT GGGCTTTTTT GCGGCCTGCT GGATTATCAG CCTCTCTCCT 
GGCGCGGGTG CCATCGCCTC GATGTCCTGC GGCCTGCAAT ACGGTTTCCT GCGCGGCTAC 
TGGAATGCCT TGGGGCTGCA GATAGCGCTG GTGGCGCAGA TCGCGATTGT CGCGGCCGGG 
CTTGGCGCGG TATTGGCAGC TTCCGAGATG GCCTTCACGC TGATCAAGTG GTTCGGCGTG 
GCGTATCTGG TCTATCTGGG CATCAAACAG TGGCGCGCAT CGCCCACCGA CCTTGCCGAC 
GAATCCGCCG TGCGGCCGGT GGGCAAGCCG ATGACGCTGG TGTTCCGCGG TTTTCTGGTC 
AACATCAGCA ACCCCAAGGC GCTGATCTTC ATCCTGGCGA TCCTGCCGCA GTTCATCGAG 
CCGACTGCTC CGCTGTTCAT GCAGTACGTG ATCATCGCCG CGACCATGGT CGTGGTCGAT 
CTGATCGTCA TGGCGGGTTA CACAGGGCTG GCGTCGAAGG TGTTGCGTGC GCTCAAGACC 
CCTCGCCAAC AGCGTCGCCT GAACCGCACC TTTGCCAGCC TGTTCGTCGG CGCGGCCGGT 
TTTCTCGCGA CGTTGCACCG CGGCACGGCC TGA
 
Protein sequence
MALETWLGFF AACWIISLSP GAGAIASMSC GLQYGFLRGY WNALGLQIAL VAQIAIVAAG 
LGAVLAASEM AFTLIKWFGV AYLVYLGIKQ WRASPTDLAD ESAVRPVGKP MTLVFRGFLV 
NISNPKALIF ILAILPQFIE PTAPLFMQYV IIAATMVVVD LIVMAGYTGL ASKVLRALKT 
PRQQRRLNRT FASLFVGAAG FLATLHRGTA