Gene PSPTO_0113 details

Gene Information

• Locus tag: PSPTO_0113
• Symbol: rep
• ID: 1181721
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 132432
• End bp: 134441
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637391490
• Product: ATP-dependent DNA helicase Rep
• Protein accession: NP_789972
• Protein GI: 28867353
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0210] Superfamily I DNA and RNA helicases
• TIGRFAM ID: [TIGR01074] ATP-dependent DNA helicase Rep

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCGAC TCAATCCCCG GCAGCAGGAA GCCGTGAACT ACGTCGGCGG CCCTCTTTTG 
GTGCTCGCCG GTGCCGGTTC CGGCAAGACC AGTGTGATCA CCCGCAAAAT TGCCCACCTG 
ATCCAGAACT GCGGCATCCG TGCTCAATAC ATCGTCGCCA TGACCTTCAC CAACAAGGCC 
GCGCGCGAGA TGAAAGAGCG CGTCGGCACG CTGCTCAAGG GCGGTGAAGG GCGTGGCCTG 
ACGGTCTCGA CCTTCCACAA TCTGGGCCTG AACATCATCC GCAAGGAACA CACGCGGCTG 
GGCTATAAGC CGGGGTTTTC GATCTTTGAC GAGACCGACG TCAAGGCTTT GATGACCGAC 
ATCATGCAAA AAGAGTACTC GGGTGACGAC GGCGTCGACG CAATCAAGAA CATGATCGGC 
TCGTGGAAAA ACGATCTGAT CCTGCCTGCC GAAGCTCTGG AAAACGCTCG CAACCCCAAA 
GAGCAGACTG CCGCCATCGT CTACACCCAC TACCAGCGCA CGCTCAAGGC GTACAACGCG 
GTGGACTTCG ATGACCTGAT TCTGGTGCCG GTCAAGCTGT TCCAGGAGCA CCCCGACGTT 
CTGGAAAAAT GGCAGAACAA GGTGCGCTAC CTGCTGGTGG ACGAGTATCA GGACACCAAC 
GCCAGTCAGT ACCTGCTGGT GAAACTGCTG ATCGGCACGC GCAACCAGTT CACCGTGGTG 
GGCGACGACG ACCAGTCGAT CTACGCCTGG CGTGGTGCGC GGCCGGAAAA CCTGATGTTG 
CTCAAGGACG ACTATCCGTC GTTGAAAGTC GTCATGCTGG AGCAGAACTA CCGCTCCACC 
AGCCGCATCC TGCGCTGCGC CAACGTGCTG ATCTCCAACA ACCCGCACGC CTTTGAAAAA 
CAATTGTGGT CCGAGATGGG CCATGGTGAC GAAATCCGCG TCATCCGCTG CCGTAACGAA 
GACGCCGAAG CCGAGCGGGT GGCGATGGAA ATCCTCACCC TGCACCTGCG CACCGACCGG 
CCTTACAGCG ACTTCGCCAT CCTCTATCGC GGTAACTATC AAGCCAAGCT GATCGAGCTG 
AAATTGCAGC ACCACCAGGT GCCGTATCGC CTGTCGGGTG GCAACAGCTT TTTCGGGCGC 
CAGGAAGTCA AGGACCTGAT GGCCTACTTC CGCCTGCTGG TGAACCCCGA CGACGACAAC 
GCCTTCCTGC GGGTGATTAA CGTGCCGCGC CGGGAAATCG GCTCGACCAC GCTGGAAAAA 
CTGGGCAACT ACGCCACCGA GCGCAAAGTG TCGATGTACG CCGCCACCGA AGAAATCGGC 
CTGGGCGAGC ATCTGGACAG CCGCTACACC GACCGGTTGC AGCGTTTCAA GCGCTGGATG 
GACGGCGTGC GCCAGCAGTG CGCGCAGAAC GACCCTATCG CCGCGCTGCG CAGCATGGTC 
ATGGACATCG ATTACGAAAA CTGGCTGCGC CAGAACAGCT CCAGCGAAAA GGCGGCCGAT 
TACCGGATGA GCAACGTCTG GTTCCTGATC GAAGCGTTGA AAAACACGCT GGAGAAGGAC 
GAAGAAGGCG GCATGACCAT CGAGGAGGCC ATCGGCAAGC TGGTCCTGCG CGACATGCTC 
GAGCGTCAGC AGGAAGAGGA AGACGGTGCC GAAGGCGTAC AGATGATGAC CCTGCACGCG 
TCCAAGGGCC TGGAGTTTCC GTACGTGTTC ATCATGGGCA TGGAGGAAGA GATCCTTCCG 
CACCGCTCCA GCATCGAAGC CGACACCATT GAAGAAGAGC GCCGTCTGGC CTACGTGGGC 
ATTACCCGTG CGCGGCAGAC CCTGGCGTTC ACCTTCGCCG CCAAACGCAA GCAGTACGGC 
GAAATCATCG ACTGCGCGCC TAGCCGTTTT CTGGACGAGC TGCCCCCGGA CGATCTGGCC 
TGGGAAGGCA ACGATGACAC GCCTACGGAA GTTAAAGCGG TGCGCGGCAA CACCGCACTC 
GCCGACATTC GCGCCATGCT GAAACGCTAG 

 

Protein sequence

MSRLNPRQQE AVNYVGGPLL VLAGAGSGKT SVITRKIAHL IQNCGIRAQY IVAMTFTNKA 
AREMKERVGT LLKGGEGRGL TVSTFHNLGL NIIRKEHTRL GYKPGFSIFD ETDVKALMTD 
IMQKEYSGDD GVDAIKNMIG SWKNDLILPA EALENARNPK EQTAAIVYTH YQRTLKAYNA 
VDFDDLILVP VKLFQEHPDV LEKWQNKVRY LLVDEYQDTN ASQYLLVKLL IGTRNQFTVV 
GDDDQSIYAW RGARPENLML LKDDYPSLKV VMLEQNYRST SRILRCANVL ISNNPHAFEK 
QLWSEMGHGD EIRVIRCRNE DAEAERVAME ILTLHLRTDR PYSDFAILYR GNYQAKLIEL 
KLQHHQVPYR LSGGNSFFGR QEVKDLMAYF RLLVNPDDDN AFLRVINVPR REIGSTTLEK 
LGNYATERKV SMYAATEEIG LGEHLDSRYT DRLQRFKRWM DGVRQQCAQN DPIAALRSMV 
MDIDYENWLR QNSSSEKAAD YRMSNVWFLI EALKNTLEKD EEGGMTIEEA IGKLVLRDML 
ERQQEEEDGA EGVQMMTLHA SKGLEFPYVF IMGMEEEILP HRSSIEADTI EEERRLAYVG 
ITRARQTLAF TFAAKRKQYG EIIDCAPSRF LDELPPDDLA WEGNDDTPTE VKAVRGNTAL 
ADIRAMLKR