Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0109 |
Symbol | |
ID | 1181717 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 127696 |
End bp | 128949 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637391486 |
Product | hypothetical protein |
Protein accession | NP_789968 |
Protein GI | 28867349 |
COG category | [R] General function prediction only |
COG ID | [COG0446] Uncharacterized NAD(FAD)-dependent dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGCCT TGAACACTAA CTGCCAGATC CTGATTGTCG GCGGCGGCGC TGCCGGCATA GCGACTGCCG CAAGCCTGCT TGCCCGTGAC GCCTCGCTGC AAATCACGCT GGTGGACCCG GCCGATACCC ATTACTACCA GCCAGGCTGG ACCATGGTCG GTGCGGGGGT TTTTGAGCCG CAATCGACGG CGCGCAGTAT GGAGTCGCTT ATTCCCAAAG GTGTGCAGTG GATCAAGGCT GCGGTAGCGA CGTTCGAGCC GCAGGATAAC GCCCTCACGC TGGAAGACGG GCGTTCGATT GGCTATCAGC AACTGGTGGT TTGCCCTGGC CTGAAACTGG ATTGGGCGGC CATCGACGGG CTGGTCGATA CGCTGGGTGC CAATGGCGTG ACCTCCAATT ATCGTTATGA CCTGGCGCCC TACACCTGGA AACTGGTGCA GGGCCTGAAA CAGGGTCGCG CGTTATTCAC CCAGCCGCCC ATGCCGATCA AATGCGCGGG TGCGCCTCAG AAAGCCCTGT ACTTGTCCTG CGATCACTGG CTCAAAGCGG GTCGTCTCGG GCAGATCAAC GCACAGTTCT ATAATGCCGG TGGCGTGTTG TTCGGCGTGG CGGACTATGT TCCTGCGCTG ATGAAGTATG TTCAACGCTA TGCCATCGAC CTCAAGTTCA GCCATCGACT GATCGCGGTC GACGGGCCTG GAAAGCGCGC GACGTTCATC CAGACGCTGC CGGACGGAAC CTGTGAGACC GTCGAGCAAA GCTTCGAGAT GTTGCACGTA GTGCCACCGC AGATTGCCCC GGACTTCATC CGCAACAGCC CGCTGGCCGA TGTGGCAGGC TGGGTGGACG TGGATCCCGC CACGCTCAGG CACCGCCGGT TCGCCAACAT TCATGGCCTG GGCGATGTCA CCAACACCAG CAATGCCAAG ACGGCCGCGG CAGCGCGCAA GCAGGCGCCG GTGGCGGCCA ACAACGTGCT GGTTGCGATG GGTCGTCTGA GTGAACCCGT CATTTACGAC GGTTATGGCT CCTGCCCGCT GACGGTCGAA AAAGGCAAGA TCGTGCTGGC CGAGTTCACC TATGGCGGCA AGGTTGCCCC CAGCTTTCCG GGCTGGTTGC TGGATGGCCG CAAACCGACC CGTCTGGCGT GGTGGTTGAA GGCGAGCGTG CTGCCGGCGC TGTACTGGAA CGGCATGCTC AAAGGCCGTG AATGGCTGGC CCGACCGAAG AAGGCCACAG CCAGACATGA TTGA
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Protein sequence | MTALNTNCQI LIVGGGAAGI ATAASLLARD ASLQITLVDP ADTHYYQPGW TMVGAGVFEP QSTARSMESL IPKGVQWIKA AVATFEPQDN ALTLEDGRSI GYQQLVVCPG LKLDWAAIDG LVDTLGANGV TSNYRYDLAP YTWKLVQGLK QGRALFTQPP MPIKCAGAPQ KALYLSCDHW LKAGRLGQIN AQFYNAGGVL FGVADYVPAL MKYVQRYAID LKFSHRLIAV DGPGKRATFI QTLPDGTCET VEQSFEMLHV VPPQIAPDFI RNSPLADVAG WVDVDPATLR HRRFANIHGL GDVTNTSNAK TAAAARKQAP VAANNVLVAM GRLSEPVIYD GYGSCPLTVE KGKIVLAEFT YGGKVAPSFP GWLLDGRKPT RLAWWLKASV LPALYWNGML KGREWLARPK KATARHD
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