Gene PSPTO_0105 details

Gene Information

• Locus tag: PSPTO_0105
• ID: 1181713
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 123831
• End bp: 124430
• Gene Length: 600 bp
• Protein Length: 199 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637391482
• Product: DNA-binding protein
• Protein accession: NP_789964
• Protein GI: 28867345
• COG category: [G] Carbohydrate transport and metabolism; [K] Transcription
• COG ID: [COG0662] Mannose-6-phosphate isomerase; [COG1396] Predicted transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGGCGT TCATCTCGAC TAGACCTGAC AAAAACTGGG GGAATATCGC ATTGGACGTG 
GGTGAACGGC TGCAATCGAT TCGCAAGCTC AAGGGCCTGT CCCAGCGTGA ACTCGCCAAA 
CGGGCAGGCG TGACCAATAG CACCATCTCC ATGATCGAGA AAAACAGCGT CAGCCCGTCG 
ATCAGTTCCC TGCGCAAAGT GCTGGGTGGC ATTCCCATGT CCATGGTCGA GTTTTTTTCC 
GAAGAGACCG TGCCGGAAAA CTCAGCTCAG GTGGTCTACA AGGCCAGCGA GCTGATCGAT 
ATCTCTGACG GCGCCGTGAC CATGAAGCTG GTCGGCAAAT CGCATCAGGG CCGCGCCATC 
GCGTTTCTCA CCGAAACCTA CCCGCCGGGT GCAGACACCG GGGAAGAAAT GCTGATTCAT 
GAGGGCGAAG AAACCGGAAT CCTTGTGGAA GGGCGTCTTG AGCTGGTGGT CGGGCTCGAC 
ACCTACTTGC TAGAAGCGGG CGACAGCTAC TATTTCGCAA GCACCCGACC GCATCGCTTC 
CGCAACCCGT TCGACGTGCC TGCGCGGTTG ATCAGCGCGG CAACACCCGC CAATTTCTGA 

 

Protein sequence

MMAFISTRPD KNWGNIALDV GERLQSIRKL KGLSQRELAK RAGVTNSTIS MIEKNSVSPS 
ISSLRKVLGG IPMSMVEFFS EETVPENSAQ VVYKASELID ISDGAVTMKL VGKSHQGRAI 
AFLTETYPPG ADTGEEMLIH EGEETGILVE GRLELVVGLD TYLLEAGDSY YFASTRPHRF 
RNPFDVPARL ISAATPANF