Gene PSPTO_0068 details

Gene Information

• Locus tag: PSPTO_0068
• Symbol: exbD-1
• ID: 1181676
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 91114
• End bp: 91539
• Gene Length: 426 bp
• Protein Length: 141 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637391445
• Product: TonB system transport protein ExbD
• Protein accession: NP_789927
• Protein GI: 28867308
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0848] Biopolymer transport protein
• TIGRFAM ID: [TIGR02803] TonB system transport protein ExbD, group 1

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGGCCTGC ATCTTAACGA GGGCGGCGAT GATCTCGCCG AGAACCATGA AATCAACGTG 
ACGCCGTTCA TCGACGTCAT GCTGGTGCTG TTGATCATCT TCATGGTGGC CGCGCCGTTG 
GCCACCGTAG ACATCAAGGT CGATCTGCCG GCTTCCACCG CCACGCCGCA ACCCAGGCCC 
GAGAAGCCGA TCTTCCTCAG CGTCAAGACC GACAAAAGCC TGTATCTGGG CGAAGAGAAG 
GTGGCCCGCG AGCAGATTGG CCAGGTTCTG GACGCCCGCA CCAAGGGCAA GAAGGACACG 
ACGATCTTCT TCCAGGCCGA CAAGGGTGTG GATTACGGCG ACCTGATGGA CGTCATGAAC 
ACGCTTCGCG GTGCCGGTTA CCTGAAGGTC GGGCTGGTCG GGCTTGAGAC GGTTGGTAAG 
AAATGA 

 

Protein sequence

MGLHLNEGGD DLAENHEINV TPFIDVMLVL LIIFMVAAPL ATVDIKVDLP ASTATPQPRP 
EKPIFLSVKT DKSLYLGEEK VAREQIGQVL DARTKGKKDT TIFFQADKGV DYGDLMDVMN 
TLRGAGYLKV GLVGLETVGK K