| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0061 |
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| Symbol | hopY1 |
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| ID | 1181669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 82500 |
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| End bp | 83363 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637391438 |
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| Product | type III effector HopY1 |
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| Protein accession | NP_789920 |
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| Protein GI | 28867301 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATTA CGCCGCTCAC GTCAGCCGCG GGCAAGGGCT CGTCCGCACA AGGCACAGAC
AAAATTTCCA TTCCCAACTC CACGCGCATG ATCAATGCCG CTTCAATCAA GTGGTTGAAT
AAGGTGCGTA GCGCCATCAG TGACCACATC CGCACCAGCA TCGAGAAAGG GAAACTGTTC
GAGCTCGCCT CCTTGGGCAG CAACATGTTC GGTGTCCCGG CTCTTTCAGC GCGCCCCTCG
ACGCTCCAAC CTGTGTTGGC GTTTGAGGCT GACCCCAATC ACGACCTGAA CCTTGTCAGG
GTCTATATGC AGGACAGCGC CGGCAAGCTC ACTCCCTGGG ACCCGACGCC CAACGCGGTC
ACGACGACGT CGAATCCATC AGAGCCTGAT GCGCAGAGCG ATACGGCTTC GTCATCATTA
CCTCGGCGGC CTCCCGCAGG CTCGGTGCTG AGTTTGCTGG GCATTGCGCT GGATCACGCG
CAACGCCACA GTCCTCGCGC GGACAGGTCT GCCAAGGGAC GACCTGGCCG AGAGGAGAGG
AACGGGGCAA GGTTCAATGC CAAGCAAACA AAGCCGACAG AGGCTGAAGC CTACGGTGAT
CATCAGACAC CCAATCCTGA TTTGCACAGG CAAAAAGAGA CAGCTCAACG CGTTGCTGAA
AGCATCAACA GCATGCGAGA GCAGCAAAAT GGAATGCAAC GCGCCGAAGG GCTTCTCAGA
GCCAAAGAAG CGTTGCAAGC TCGGGAAGCC GCGCGCAAGC AGCTTCTGGA CGTGCTCGAG
GCCATCCAGG CTGGCCGTGA AGACTCCACC GACAAGAAGA TCAGCGCCAC TGAAAAGAAC
GCCACGGGCA TCAACTACCA GTGA
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| Protein sequence | MNITPLTSAA GKGSSAQGTD KISIPNSTRM INAASIKWLN KVRSAISDHI RTSIEKGKLF
ELASLGSNMF GVPALSARPS TLQPVLAFEA DPNHDLNLVR VYMQDSAGKL TPWDPTPNAV
TTTSNPSEPD AQSDTASSSL PRRPPAGSVL SLLGIALDHA QRHSPRADRS AKGRPGREER
NGARFNAKQT KPTEAEAYGD HQTPNPDLHR QKETAQRVAE SINSMREQQN GMQRAEGLLR
AKEALQAREA ARKQLLDVLE AIQAGREDST DKKISATEKN ATGINYQ
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