Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0051 |
Symbol | |
ID | 1181659 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 71041 |
End bp | 71484 |
Gene Length | 444 bp |
Protein Length | 147 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637391429 |
Product | hypothetical protein |
Protein accession | NP_789911 |
Protein GI | 28867292 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGTAGGTA AAAAACTCGT TTGGGTCACT GTGGTGACTC ACGTATTGAT TTTTGCAGGT TGGGCGCAGG CTCAACAGCC GGCGGCAGTC GCTCAGCGCC CCGTAAGCGT ACCGTATGAG GTAACTGAAG GGACGTTCCT CAATCTGACG CTGGAGCGTG TGGACCCGAA CTATGTTGCG GCGATGGTGT ACGAGAATGT TTACGACGAC TACGAGAACG TGGCAATCGC ACGAGGTAGC CGCTTGTTTG GACGTCTGAT CAACAAGATC AACGACTCAC ACGATGTGTA TTTCACACAG CTACAGCTCA GCACCGGGCA AACGCTTAGT CTTGATCCTC CACTACAAGC CACTTCCCCA TTGGGCTCTG CAGGCATCAC TGACTTCAAG CCAGCTGCCA TTGCTGGAAC CATCTGGCGA CGAGATCAGG TCATGCCCCA TTAA
|
Protein sequence | MVGKKLVWVT VVTHVLIFAG WAQAQQPAAV AQRPVSVPYE VTEGTFLNLT LERVDPNYVA AMVYENVYDD YENVAIARGS RLFGRLINKI NDSHDVYFTQ LQLSTGQTLS LDPPLQATSP LGSAGITDFK PAAIAGTIWR RDQVMPH
|
| |