Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0046 |
Symbol | |
ID | 1181654 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 62078 |
End bp | 64063 |
Gene Length | 1986 bp |
Protein Length | 661 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637391424 |
Product | hypothetical protein |
Protein accession | NP_789906 |
Protein GI | 28867287 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.489022 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTAATCG AATCTGCCGT CCTATCTGGT TTCCGTTGCT TTGCGCCCCG TCCTATCAGC GTAACAATCT CGCCAAAGAT CACGACCATC GTCGGCCCCA ACGCGGCAGG GAAAACTGCG CTTCTACACG CGTTGGCGAA GCTGTTTGGA GTGACTCGGG CACAACGCAC CGTACGTCGC TCGGACTTTC ACTTGGGACC TGATGACGAT CCCACCAGTC TTGAATCAAA GCACCTCTAC ATTGAGGTTT TGATCGCCCT TCCCGAACTG ATTGATGGAA CTGCAACGCC AGAAACGATC GCACCTTCAT TTCGGCATAT GCTAATCGAG CGACCAGACG ATGCTCCCGT CTGTCGTCTT CGGCTTGACG CTCAGTGGGA GGACGATGGA ACCGTGGAAG GCGAGGTTTC GCAAACCCTG CACTGGGTCG ACACGCTCGA CGATGCACCG CCAGAAGACA AGTGCCACCC CGTCTCCGTA GCCGATCGGG GATTAATTCA GTTGTATTAC ACACCGGCAA GCAGAGACGC TGCTGCTCAG ACCCGGGCGA CTGCCGGAGC ATTGGCGGCT CGTTTGTTAC GCGCGATCGA GTGGTCGTCC GATACCGAAG AGGCGGTTCA TGACGCTACC GAAAATCTTG CCTCTGCCTT CGAGGAAGAA GCGGCAATTG CCGCAATCAC AGAAGCTCTA CAGACGCGGT GGTCGGCACT TCATGATGAC GTCGTCGACA CTAATCCGCG CCTGAGTCTG GTAAGTCGCA GGTTCGAGGA GGTCGTCAAC AAAATTGCAG TCATGTTCGA GCAGGGACCT GACGGTCAGG AGCGCGGTAT CGAGGCGCTC AGCGACGGTC AACAATCGCT CTTTTACTTC GCTCTGGCTG CGGCCGTCTT CGACCTAGAG CGTGAGGTTG TAGCGGGATC AATTGAGGGC TTCCGAAGTG ACGCTCTGCG GATACCTGCG TTGACGATCT TCGCTTTGGA GGAACCAGAG AACCACCTTT CGCCATATTT CCTTGCTCGC ATCATCCGCC AAGTCCGATC ACTCACAACC GATGGCAGCG CGCAAGCCAT TGTCACCAGT CACTCACCCG CAGTACTTAG CCGCGTCAAT CCGACGGAAG TTCGATACTG TAGATGCGAC CCCAAAACGC GCGTGTCTAC GGTCAAGCGG ATTAAGCTTC CAGTCAACGA CGTGGAGGCT AGCAAGTTTG TAAGGGGTGC GATGTTGGCC TACCCAGAGC TTTATTTTGC GCGGTTTGTT TTGCTGGTTG AGGGAGATTC GGAAAGAATT GTTTTACCGC GACTCGCAGA GGCGCTGAAT TTGCTGATCG ATCCAGCCTT TGTCGCTATT GTCCCATTGG GTGGACGTCA TGTTCAGCAT TTTTGGCGCT TGCTTAAACA TCTGGGTATT CCTCACGCCA CGCTGTTGGA TCTTGACCTA GGGCGCGATG GAGGCGGTTT TGGACGAGTC AAAACGGCGA TCGAAAAGCT GATCGAGTTC GGTGCACCGA AAGCCGAAGT GCTGAGAATT ACAACTGGCA TCTTATCCGA TGCCGACTTA GCGAACATGC ATAATTGGCC TGATTCGGTC GATCATAGCG GCCTCCTGTC ATGGATCAAC AACAACCTAA AAGCTCATGG AGTGTATTTC TCCTCACCGC TGGATTTAGA TCTAGCAATG CTGGAAGCAT TCCCTGCCGC CTATGCAGCC ATCGTCCCCG AGCGCGGGGG TTCTCGCATG GCCGCTGACA AAGCCGCCGA AGTGGTATTG GGAACGGCAG GTCCCGGATT AAAAGCCTAC ACAGGGCCCT TTGTTGGTTA TCCCCCTCAA TTCCCGAGTT ACCGCTACCA CTTTCTCACT AACAGTAAGC CTGCAACCCA CCTTGCAGCG TTGACTCATA TCACAAAGGC GCAACTGGTA GCGCACATGC CAGTTGTGCT TGCTTCAGTG CTCAAACACA TTTCCGCGTC GTTGAGGCGG GACTGA
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Protein sequence | MLIESAVLSG FRCFAPRPIS VTISPKITTI VGPNAAGKTA LLHALAKLFG VTRAQRTVRR SDFHLGPDDD PTSLESKHLY IEVLIALPEL IDGTATPETI APSFRHMLIE RPDDAPVCRL RLDAQWEDDG TVEGEVSQTL HWVDTLDDAP PEDKCHPVSV ADRGLIQLYY TPASRDAAAQ TRATAGALAA RLLRAIEWSS DTEEAVHDAT ENLASAFEEE AAIAAITEAL QTRWSALHDD VVDTNPRLSL VSRRFEEVVN KIAVMFEQGP DGQERGIEAL SDGQQSLFYF ALAAAVFDLE REVVAGSIEG FRSDALRIPA LTIFALEEPE NHLSPYFLAR IIRQVRSLTT DGSAQAIVTS HSPAVLSRVN PTEVRYCRCD PKTRVSTVKR IKLPVNDVEA SKFVRGAMLA YPELYFARFV LLVEGDSERI VLPRLAEALN LLIDPAFVAI VPLGGRHVQH FWRLLKHLGI PHATLLDLDL GRDGGGFGRV KTAIEKLIEF GAPKAEVLRI TTGILSDADL ANMHNWPDSV DHSGLLSWIN NNLKAHGVYF SSPLDLDLAM LEAFPAAYAA IVPERGGSRM AADKAAEVVL GTAGPGLKAY TGPFVGYPPQ FPSYRYHFLT NSKPATHLAA LTHITKAQLV AHMPVVLASV LKHISASLRR D
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