Gene PSPTO_0046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0046 
Symbol 
ID1181654 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp62078 
End bp64063 
Gene Length1986 bp 
Protein Length661 aa 
Translation table11 
GC content55% 
IMG OID637391424 
Producthypothetical protein 
Protein accessionNP_789906 
Protein GI28867287 
COG category[L] Replication, recombination and repair 
COG ID[COG3593] Predicted ATP-dependent endonuclease of the OLD family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.489022 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTAATCG AATCTGCCGT CCTATCTGGT TTCCGTTGCT TTGCGCCCCG TCCTATCAGC 
GTAACAATCT CGCCAAAGAT CACGACCATC GTCGGCCCCA ACGCGGCAGG GAAAACTGCG
CTTCTACACG CGTTGGCGAA GCTGTTTGGA GTGACTCGGG CACAACGCAC CGTACGTCGC
TCGGACTTTC ACTTGGGACC TGATGACGAT CCCACCAGTC TTGAATCAAA GCACCTCTAC
ATTGAGGTTT TGATCGCCCT TCCCGAACTG ATTGATGGAA CTGCAACGCC AGAAACGATC
GCACCTTCAT TTCGGCATAT GCTAATCGAG CGACCAGACG ATGCTCCCGT CTGTCGTCTT
CGGCTTGACG CTCAGTGGGA GGACGATGGA ACCGTGGAAG GCGAGGTTTC GCAAACCCTG
CACTGGGTCG ACACGCTCGA CGATGCACCG CCAGAAGACA AGTGCCACCC CGTCTCCGTA
GCCGATCGGG GATTAATTCA GTTGTATTAC ACACCGGCAA GCAGAGACGC TGCTGCTCAG
ACCCGGGCGA CTGCCGGAGC ATTGGCGGCT CGTTTGTTAC GCGCGATCGA GTGGTCGTCC
GATACCGAAG AGGCGGTTCA TGACGCTACC GAAAATCTTG CCTCTGCCTT CGAGGAAGAA
GCGGCAATTG CCGCAATCAC AGAAGCTCTA CAGACGCGGT GGTCGGCACT TCATGATGAC
GTCGTCGACA CTAATCCGCG CCTGAGTCTG GTAAGTCGCA GGTTCGAGGA GGTCGTCAAC
AAAATTGCAG TCATGTTCGA GCAGGGACCT GACGGTCAGG AGCGCGGTAT CGAGGCGCTC
AGCGACGGTC AACAATCGCT CTTTTACTTC GCTCTGGCTG CGGCCGTCTT CGACCTAGAG
CGTGAGGTTG TAGCGGGATC AATTGAGGGC TTCCGAAGTG ACGCTCTGCG GATACCTGCG
TTGACGATCT TCGCTTTGGA GGAACCAGAG AACCACCTTT CGCCATATTT CCTTGCTCGC
ATCATCCGCC AAGTCCGATC ACTCACAACC GATGGCAGCG CGCAAGCCAT TGTCACCAGT
CACTCACCCG CAGTACTTAG CCGCGTCAAT CCGACGGAAG TTCGATACTG TAGATGCGAC
CCCAAAACGC GCGTGTCTAC GGTCAAGCGG ATTAAGCTTC CAGTCAACGA CGTGGAGGCT
AGCAAGTTTG TAAGGGGTGC GATGTTGGCC TACCCAGAGC TTTATTTTGC GCGGTTTGTT
TTGCTGGTTG AGGGAGATTC GGAAAGAATT GTTTTACCGC GACTCGCAGA GGCGCTGAAT
TTGCTGATCG ATCCAGCCTT TGTCGCTATT GTCCCATTGG GTGGACGTCA TGTTCAGCAT
TTTTGGCGCT TGCTTAAACA TCTGGGTATT CCTCACGCCA CGCTGTTGGA TCTTGACCTA
GGGCGCGATG GAGGCGGTTT TGGACGAGTC AAAACGGCGA TCGAAAAGCT GATCGAGTTC
GGTGCACCGA AAGCCGAAGT GCTGAGAATT ACAACTGGCA TCTTATCCGA TGCCGACTTA
GCGAACATGC ATAATTGGCC TGATTCGGTC GATCATAGCG GCCTCCTGTC ATGGATCAAC
AACAACCTAA AAGCTCATGG AGTGTATTTC TCCTCACCGC TGGATTTAGA TCTAGCAATG
CTGGAAGCAT TCCCTGCCGC CTATGCAGCC ATCGTCCCCG AGCGCGGGGG TTCTCGCATG
GCCGCTGACA AAGCCGCCGA AGTGGTATTG GGAACGGCAG GTCCCGGATT AAAAGCCTAC
ACAGGGCCCT TTGTTGGTTA TCCCCCTCAA TTCCCGAGTT ACCGCTACCA CTTTCTCACT
AACAGTAAGC CTGCAACCCA CCTTGCAGCG TTGACTCATA TCACAAAGGC GCAACTGGTA
GCGCACATGC CAGTTGTGCT TGCTTCAGTG CTCAAACACA TTTCCGCGTC GTTGAGGCGG
GACTGA
 
Protein sequence
MLIESAVLSG FRCFAPRPIS VTISPKITTI VGPNAAGKTA LLHALAKLFG VTRAQRTVRR 
SDFHLGPDDD PTSLESKHLY IEVLIALPEL IDGTATPETI APSFRHMLIE RPDDAPVCRL
RLDAQWEDDG TVEGEVSQTL HWVDTLDDAP PEDKCHPVSV ADRGLIQLYY TPASRDAAAQ
TRATAGALAA RLLRAIEWSS DTEEAVHDAT ENLASAFEEE AAIAAITEAL QTRWSALHDD
VVDTNPRLSL VSRRFEEVVN KIAVMFEQGP DGQERGIEAL SDGQQSLFYF ALAAAVFDLE
REVVAGSIEG FRSDALRIPA LTIFALEEPE NHLSPYFLAR IIRQVRSLTT DGSAQAIVTS
HSPAVLSRVN PTEVRYCRCD PKTRVSTVKR IKLPVNDVEA SKFVRGAMLA YPELYFARFV
LLVEGDSERI VLPRLAEALN LLIDPAFVAI VPLGGRHVQH FWRLLKHLGI PHATLLDLDL
GRDGGGFGRV KTAIEKLIEF GAPKAEVLRI TTGILSDADL ANMHNWPDSV DHSGLLSWIN
NNLKAHGVYF SSPLDLDLAM LEAFPAAYAA IVPERGGSRM AADKAAEVVL GTAGPGLKAY
TGPFVGYPPQ FPSYRYHFLT NSKPATHLAA LTHITKAQLV AHMPVVLASV LKHISASLRR
D