| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0044 |
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| Symbol | hopK1 |
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| ID | 1181652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 60407 |
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| End bp | 61423 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637391422 |
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| Product | type III effector HopK1 |
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| Protein accession | NP_789904 |
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| Protein GI | 28867285 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.576729 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGCA TTTCAACCAG CTCAGTAAAT TCCAGCTTCA ATTACACGGC CCCTACGGAG
GAAGCGCAAA ACCGCTTCGC CTCAGCGCCC GACAATTCCC CTCTAGTTGT CACCACAACA
TCTATCGCCC AAGCGTCGGA AGGGCTACAA AGGCCGGGGG CAACGCTAAG CATGCAGGCC
CAGCGACTGC GCCAATTGAT GGGGAGCCCG TCTGAGCAGT GCCGGAGGGA CACAATGTTA
GCTAAAGCTT TTGATGCTCA ACGCCTAAAC ATTAACACTC AAGCAGGCTC TTCCAACAGC
CCACACTTGA ACGCTCTCAA CACGCTCCAA CAACGACACT TCAAACCTGC GGCTGGTGGG
CTAGAAATCC CAGTTACATC CAACTCCTTA TTGGGCGGTG GCAGGCAAGT CTATCAAATT
GGCTCATCGT CACGCGAGCT AAGCCACCGA CCGGTCAATG ATCAGGACCG CGCGCCCTTC
AGGGCGCTTG AGCGGCTGCA CGCCGAGTTG TTTAGAGGTG GGCCGATTGA GTTTGTGCCT
AGAGGCAGCA ACGTGTTGGC CTCAAACGTG AGGGATGTCG ACATGGACGA GTTCGATGTC
ATCAACTCTA AAGACGGCTG CCAAGGCATT GGCACCACTG GCCTGGGACC CTGCATTGCA
GTGTGTGCAA GAGGCATGGA TAGAGAAGGG CTTCCGGTGC TGGGTGTCTA TCACCACAGT
GGTATCGGCT CACCAGAGGA TACCATGGCT ACTCTTGATC AAGCGATGCG CGATAAAGGT
GCTTTGCAAA TCAAATACTC CCTGGTAGGC GGCATGATCA TGCCTAAAGA GGAAGAGGCT
GGCAGCTATG ACGACGAGCA AAGCTTTTTG GCATTGAAAG GCAGTTATTC AATCGAAGGG
GCGCGCTTGC ATGTATCCGA AGGCGAAGAG GACGTGCATA CCGGCGAGGA CAACAGTGTC
AATGTTCTGC TGATGCCTGA CCGCGTTCTG TACGGTCGCG ACACGCTCTA CTGCTGA
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| Protein sequence | MNRISTSSVN SSFNYTAPTE EAQNRFASAP DNSPLVVTTT SIAQASEGLQ RPGATLSMQA
QRLRQLMGSP SEQCRRDTML AKAFDAQRLN INTQAGSSNS PHLNALNTLQ QRHFKPAAGG
LEIPVTSNSL LGGGRQVYQI GSSSRELSHR PVNDQDRAPF RALERLHAEL FRGGPIEFVP
RGSNVLASNV RDVDMDEFDV INSKDGCQGI GTTGLGPCIA VCARGMDREG LPVLGVYHHS
GIGSPEDTMA TLDQAMRDKG ALQIKYSLVG GMIMPKEEEA GSYDDEQSFL ALKGSYSIEG
ARLHVSEGEE DVHTGEDNSV NVLLMPDRVL YGRDTLYC
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