| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0037 |
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| Symbol | |
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| ID | 1181645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 47448 |
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| End bp | 52358 |
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| Gene Length | 4911 bp |
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| Protein Length | 1636 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637391416 |
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| Product | helicase domain protein |
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| Protein accession | NP_789898 |
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| Protein GI | 28867279 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4889] Predicted helicase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.527167 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCCC TATCCTCCCT GCTCGACACC TATCGCTCCG CCGCTGTCAC TGAGCGCGAA
AAAGGCACCT ATTTCGAAGA GCTGATTTGC GGCTACCTGC GCAACGAAGC CACTTATCGC
GATCTATACG AAAAGGTGTG GACGTATGCC GAATGGGCGA AGGAGCAGGG TCTTAGTGGT
AAGGACGCGG GCATTGATCT GGTAGCGCGC ACCCAAGGAA CCGGCGAGTA CCACGCCATC
CAGTGCAAGC TGTACGCCGA AGATTACAAA GTCCAGAAGA AGGACATCGA CAGCTTTTTC
ACTGCCTCGG GCAAAGCTCC GTTCACTCAC AGGATCATCG TTGCAACCAC CAACAACTGG
AGCGAACACG CCGAGGACGC ATTGCAGGGG CAACACCAGA CGATCAATAA GATCGACCTG
CAAGCCTTGG AAGAAAGCCA GATCGACTGG GCCAAGTACC AGCCCCACCA AGCCGTTGTT
CTCAAAGCGC GTAAGCAATT GCGCGATCAC CAACAAACCG CACTAAACGC CACCGCTGCC
GGCTTAAATG ATGCCGAGCG CGGCAAATTG ATCATGGCGT GCGGCACTGG CAAGACCTTC
ACCAGCCTGA AGATTGCTGA GCGTCTGGCT GGCAAGGGCA AGCGTGTGTT GTTCCTGGTA
CCTAGCCTGT CCCTGCTATC GCAGACCCTC ACCGAGTGGA CGCAGGAAAG CGAAACCCCG
CTCCATAGCT TCGCCGTGTG CTCGGATAGC GACGTAGGCA AGAAGCGCAA GGCCGATGAA
GATACCGTGC AGGTGTTCAC CCACGAACTG CGCTACCCAG CTACCACCAA GGCGGATCGG
CTCGCAGCCG AAATGCTCAA GCGCCACGAT GCCGAGCACA TGAGCGTGGT CTTCTCCACC
TACCACTCCA TCGACGTGAT CAGCCGCGCC CAACACGAAT ACGACCTGGC AGCATTCGAT
CTGGTGATCT GCGATGAAGC GCACCGCACA ACCGGCGCAA CCTTCGACGA CGATGACGAA
AGTACCTTTG TGCGCATCCA TGATGTCGAC TACATCCGCG CCATCAAACG CCTGTACATG
ACCGCCACGC CACGCATCTA CGGCGACAAC GCCAAGATCA AGGCCGAATC CGGTGAAGTC
ACCCTGTGCT CTATGGATGA CGAGGCGCTG TACGGTAAAG AACTGTTCGT AATTAACTTC
TCCGAGGCCG TTCAGCGCGG CCTGCTCACC GACTACAAGG TGCTGGTACT CACTGTTGAA
GAGAGCATTG TCAATCGTCG GCTTCAAGAG CTGCTGAAAG ACGAAGACAA CCAGCTCAAG
GTGGACGACG CCGCCAAAAT CGTCGGCTGC TGGAAAGCCC TGGCCAAACA GGGGCTAGCT
GAAAATCTGG TGGGTGATGA TCAGCCCATG AAGCGCGCTG TAGCCTTCTG TCAGGTCATC
TCGCCCAGCT ACAAGGGCAC CAAGCACAAG GTCAGCTCGA TCAACATCGC CAGCATGTTC
CAGTCGGTGG TTGAGGCTTA TCAAGAGTCA GAAAACATCG ACGAGGCCTC GCGCATCATC
TGCGAAGCTG CACACGTCGA TGGCTGCATG AATGCCAGCC AGAAAGAAGC CAAGCTCAAC
TGGCTGAAGG AGGAGCCTCC AGCCAACACT TGCCGCATTC TCAGCAACGT GCGCTGCCTA
TCTGAGGGCG TTGACGTGCC GGCGCTGGAC GCCGTGCTCT TCCTCACCCC GCGTAACTCT
CAAGTGGACG TGGTGCAGTC TGTAGGCCGG GTGATGCGCA ACGCGCCGGG CAAGAGACGT
GGCTATGTCG TGCTGCCCGT CGTCATTCCA GCCGGTATGG AGCCGCACGA AGCGCTCAAC
GACAATCAGA CCTACAAGGT CGTTTGGCAG GTGCTCCAGG CCCTGCGCTC GCACGACGAC
AGCTTCGACG CCATGGTCAA CAAGCTTGAT CTGATCGGCT CAGACCCGCG CAAGATGGAG
GTCATCGCCA TCACCGACAA GGCCGACAAG AAGGCGAAGA GAACCAGCGG AACGAGCAAC
GGCCAAGCCG GCAAAGGCCA GTACGGCATC GGCGAGAAGC GCCCTCGACA CGATGCCGAA
GGTCAGATGA CTCAGCAGGC CGAGCTGACC TACGAAGTGG GCGAGATCGA AAAGGCCATC
TACGCCAAGA TCGTCGAGAA GTGTGGCAAC CGCCACCACT GGGAAGACTG GGCGAACGAC
ATCGCCAAGA TCGCCCGTAC CCATATCGAC CGTATCCAGG GCATCTTGGA GAATTCAGCC
AACACTAGGG AAAAGGCCGC TTTCAACGCC TTCGCCGCCG AGTTGCGTGA CGACCTCAAC
GACAGCATCA GCGATGGCGA GATTGTCGAG ATGCTCGCCC AGCACTTGGT AACTAAGCCG
GTGTTCGATG CGCTGTTCGA CGAATACAGC TTCGCCAAGC ACAACCCTAT GGCGAAGGCC
ATGCAAGGGG TGCTGGACGC GCTCCACGAA CACCATTTGG AGAAAGAAGC CGACACCCTG
GAGAAGTTCT ACGCCAGCGT TCGACAGCGT GCCTTGGGTA TCGACAATGC TCAGGGCAAG
CAGAAGATCA TCGTCGAGCT ATATGACAAA TTCTTCCGCA ACGCTTTCCC GAAAATGACT
GAACGCTTGG GCATCGTTTA CACACCAGTC GAAGTGGTGG ACTTCATCCT TCACAGCGTA
AACCACCTGC TGCAACAGGA ATTCGGCCAG ACCCTTGGCA GCAAGGGCGT ACACATCATC
GACCCATTCA CCGGCACAGG CACCTTTATC ACCCGCCTGA TCCAGTCGGG CCTGATCAAA
CCGGAAGAAC TGCCACACAA ATACAAGCAC GAGATCCACG CCAACGAACT GGTGCTGCTG
GCCTATTACA TCGCCGCCAT AAATATTGAA GCGGCCTATC ACGGTGAAGT GATCGACGGG
TACACCCCGT TTGAAGGTAT CTGCTTGACC GACACTTTCC AGATGTATGA GAAGGACGAT
TTGGTAGACG CTTTGCTAGT GGACAACAGT GCCCGGCGTA AGCGCCAGAA GAATTTGGAC
ATTCGAGTGA TTGTTGGCAA CCCACCGTAT TCCGAGGGTC AAAAAAGTGA AAACGATAAT
AATGCCAACC TGGGTTATCC GAAATTAGAT AGTCAAATTC GATCAACATA TGCTCGACAA
TCCGCAGCAA CACTTTCGAA AGGTTTATAT AACAGCTATA TACGGGCGAT TCGTTGGGCA
AGCGACCGCT TAGGTGAAAG CGGAATAGTA GGCTTTGTTA CCAACGCAGG CTTTCTCGAA
GCGAGATTTG CGGACGGAAT GCGGAAATGT TTGGCTGAGG AGTTTAGTAA TATTTACATA
TTTCACCTAC GAGGGCTGCG AGGAAAGCAT ACGTCCGGTG AGAGAGCCAA ACAGGAAGGT
GGGCAAATAT TCGGCATGGG CAGTGGGACA GCAATCTGCA TATTCTTTCT AGTCAAAAAT
ACTGATTCCG AACGACGTGG GAACATTTAT TTTCATTCTA TCGAAGAATA TCTAGACCGC
GACCAAAAGC TTGCAAAGTT AAAAGAGTTG CAGGATGTCT CAGGGATCGC TGCGGCCAAC
GGCTGGACAG AGATTAGCCC AGACTCATAT GGAGATTGGC TGAGGCAGCG TGAAGATGGA
TTTAACGATT TTTTCTTGTT AGGAGACAAG AAAGTTAATT CTCCGAAGCT ATTCCATAGT
TATTCGCAGG GCATTCTTAC TGCAAGGGAT ACCTGGTGTT TCAATGGAAG TAATAAAAAA
GTTGTAAAAA ACATGGGTGC CATGATTGAT TTTTATAATG GCGAAGTTTT AAGGTTCAAT
AAACGTTTTA ACGGTATAGA TCAAAAGTCT CGTAACGCGC TTGTTGATTC TTTTATCGAC
GCCAATCCGG AGAAAATTAG CTGGACTAGG GCTCTGAAGC AGGATCTATC GAAAGGTAAA
AAGTTTGATT TCCAGGAAAG TGGTATGCGG GAATGCTTGT ATCGACCATT TACTAAACAA
TGGATTTACT TTGATCGCAG ATTCAACGAG ATGGTCTATC AGATGCCGCG TATCTTCCCT
AATGCGGCAG ACCACAATCT AATGATTTGT GTCTCTGGCC CAGGCTGCAT AACAGGTTTC
AGTGCGATCA TTTCAAAAGT GCCTGTTGAG TTTTGTATAG CAGCGATGAA AGGGGGGAGT
CAGTGTTTTC CACTTTATCT TTACGATGAG CCGACTGAAG GCCCTGATCA AGGCGGATTG
TTTGTGACGT CGGAAACACC AGCGCTAAGG CGTCGCGATG CTATCACTGA CGAGGGGCTG
ACTCATTTCG AAGCTAGTTA TCAAGACGAG AAAATCGGTA AAGAAGACCT GTTTTATTAC
GTCTACGGCA TACTGCATTC ACAGGACTAC CGCGAACGCT ATGCCGATAA TCTGAGCAAG
GAGTTACCGC GCATTCCGGC AGTGAGGAAT GCTGCGGACT TCTGGGTCTT CAGCAAGGCG
GGCCGCGCCC TGGCCGATCT CCACCTAAAC TACGAAACCG TCGAGCCGTA CCCGCTAACC
ATCGAAGCCA AGGGCACGCT TACCGATGCT GATTACCGAG TGGAGAAGAT GAAGTTCGCC
AAGAAAGGCG ATAAGACCAC TGTCATCTAC AACCACCGCA TCACCCTCAA AGGCGTCCCT
GAAGCAGCCT GGGACTACGT GGTTAACGCT AAGGCCGCAC TGAGCTGGGT GATGGAGCGC
CAGGCCGTGC GCACGGACAA AGCCAGCGGC ATCGTCAACG ACGCCAACGA TTGGGCCACC
GAAACTATGG GCAACCCTAA GTACCCTCTT GAGCTGTTCC AGCGTGTGGT CACAGTGAGC
CTAGAAACCC AAAAGATCGT CAACTCGCTG CCGGCACTGG ATATTGCTTA A
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| Protein sequence | MSALSSLLDT YRSAAVTERE KGTYFEELIC GYLRNEATYR DLYEKVWTYA EWAKEQGLSG
KDAGIDLVAR TQGTGEYHAI QCKLYAEDYK VQKKDIDSFF TASGKAPFTH RIIVATTNNW
SEHAEDALQG QHQTINKIDL QALEESQIDW AKYQPHQAVV LKARKQLRDH QQTALNATAA
GLNDAERGKL IMACGTGKTF TSLKIAERLA GKGKRVLFLV PSLSLLSQTL TEWTQESETP
LHSFAVCSDS DVGKKRKADE DTVQVFTHEL RYPATTKADR LAAEMLKRHD AEHMSVVFST
YHSIDVISRA QHEYDLAAFD LVICDEAHRT TGATFDDDDE STFVRIHDVD YIRAIKRLYM
TATPRIYGDN AKIKAESGEV TLCSMDDEAL YGKELFVINF SEAVQRGLLT DYKVLVLTVE
ESIVNRRLQE LLKDEDNQLK VDDAAKIVGC WKALAKQGLA ENLVGDDQPM KRAVAFCQVI
SPSYKGTKHK VSSINIASMF QSVVEAYQES ENIDEASRII CEAAHVDGCM NASQKEAKLN
WLKEEPPANT CRILSNVRCL SEGVDVPALD AVLFLTPRNS QVDVVQSVGR VMRNAPGKRR
GYVVLPVVIP AGMEPHEALN DNQTYKVVWQ VLQALRSHDD SFDAMVNKLD LIGSDPRKME
VIAITDKADK KAKRTSGTSN GQAGKGQYGI GEKRPRHDAE GQMTQQAELT YEVGEIEKAI
YAKIVEKCGN RHHWEDWAND IAKIARTHID RIQGILENSA NTREKAAFNA FAAELRDDLN
DSISDGEIVE MLAQHLVTKP VFDALFDEYS FAKHNPMAKA MQGVLDALHE HHLEKEADTL
EKFYASVRQR ALGIDNAQGK QKIIVELYDK FFRNAFPKMT ERLGIVYTPV EVVDFILHSV
NHLLQQEFGQ TLGSKGVHII DPFTGTGTFI TRLIQSGLIK PEELPHKYKH EIHANELVLL
AYYIAAINIE AAYHGEVIDG YTPFEGICLT DTFQMYEKDD LVDALLVDNS ARRKRQKNLD
IRVIVGNPPY SEGQKSENDN NANLGYPKLD SQIRSTYARQ SAATLSKGLY NSYIRAIRWA
SDRLGESGIV GFVTNAGFLE ARFADGMRKC LAEEFSNIYI FHLRGLRGKH TSGERAKQEG
GQIFGMGSGT AICIFFLVKN TDSERRGNIY FHSIEEYLDR DQKLAKLKEL QDVSGIAAAN
GWTEISPDSY GDWLRQREDG FNDFFLLGDK KVNSPKLFHS YSQGILTARD TWCFNGSNKK
VVKNMGAMID FYNGEVLRFN KRFNGIDQKS RNALVDSFID ANPEKISWTR ALKQDLSKGK
KFDFQESGMR ECLYRPFTKQ WIYFDRRFNE MVYQMPRIFP NAADHNLMIC VSGPGCITGF
SAIISKVPVE FCIAAMKGGS QCFPLYLYDE PTEGPDQGGL FVTSETPALR RRDAITDEGL
THFEASYQDE KIGKEDLFYY VYGILHSQDY RERYADNLSK ELPRIPAVRN AADFWVFSKA
GRALADLHLN YETVEPYPLT IEAKGTLTDA DYRVEKMKFA KKGDKTTVIY NHRITLKGVP
EAAWDYVVNA KAALSWVMER QAVRTDKASG IVNDANDWAT ETMGNPKYPL ELFQRVVTVS
LETQKIVNSL PALDIA
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