Gene PSPTO_0025 details

Gene Information

• Locus tag: PSPTO_0025
• ID: 1181633
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 31338
• End bp: 31967
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637391404
• Product: hydrolase, haloacid dehalogenase-like family
• Protein accession: NP_789886
• Protein GI: 28867267
• COG category: [R] General function prediction only
• COG ID: [COG1011] Predicted hydrolase (HAD superfamily)

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCATG TCCAAGCTGT GATCTTCGAT GCGTTCGGTA CCATCACGCG GATCGAGAAC 
GCGCGCCATC CATTTCGCCA GCTTCTAAAG CTGGGTATCG CCCAAGGGCG GCGGCCTAAG 
CCGGATGATG CGTCAATGCT AATGCGCCAT CCTTGGGGGC TTGCACAAGC CGCTGACCAT 
TTCGGTATTG ATGTAACACC GGCAGAGCTT GCGCGAATCC AAGCCGAACT TGATGCCGAG 
GTCGCTAGCA TCCAACCCTT CGCCGACGCC CTCGCCTGCA TTGAGGCACT GCAAGCGCAT 
GGTCTGAAAG TGGCGGTCTG TTCAAATTTG GCCAGGCCCT ATGGCGCGGC TGTTAAGCGC 
ATCTTTCCTG GCTTGGAGAG CTACGGCTTC AGCTATGAGA TAGGGACGCT CAAGCCAGAT 
CGGCGGATCT ACGAGGCAGC GCTGACTGAG TTGGCTGTAG ACGCCTGCAA GGTGTGGATG 
ATCGGGGATT CCCAGCGTTG TGATCGAGAC GGGCCAATAG CCCTTGGAAT CAAAGGGCAT 
TATCTAAACC GGACTGGAGC AGGATCGCCA TCTGACTTTC GCGATTTGAT GGCTTTCAAG 
CACTCCGTGT TTGAAAGCCG ATCGCCTTGA 

 

Protein sequence

MSHVQAVIFD AFGTITRIEN ARHPFRQLLK LGIAQGRRPK PDDASMLMRH PWGLAQAADH 
FGIDVTPAEL ARIQAELDAE VASIQPFADA LACIEALQAH GLKVAVCSNL ARPYGAAVKR 
IFPGLESYGF SYEIGTLKPD RRIYEAALTE LAVDACKVWM IGDSQRCDRD GPIALGIKGH 
YLNRTGAGSP SDFRDLMAFK HSVFESRSP