Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_A0114 |
Symbol | ompA |
ID | 1172537 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004349 |
Strand | + |
Start bp | 99408 |
End bp | 100436 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637346561 |
Product | outer membrane protein A |
Protein accession | NP_720438 |
Protein GI | 24376330 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.394411 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATATA AACTAATTTT ATTGACTTTT TTACCATTTT CATTTTCTAC TCTGGCGTCA GAGCCCCCTT CTTATTTGCC ATTTCAATCT TACTGGTATG CAGGTGCAGG CTTAGGTCAA GGCCATTACA GTAATGGCAG TAACCCACAG TCTTACGATA GCGTGCGTGA CCGTTTTGCA GGTTCGGTGT ATTTGGGTTA TCAAGTTAAC CCTTACCTTG CGCCGGAATT GAGTTATCAA TTCCTAGGCA GTGCTTATGC CAATTATGAG CAAGGGCAGA TTAGTGGTGA TTTTCAACAG GTGGTCTTGG CGGCTCGCTT TGGTTATCCG CTAACGACAT CCCTTTATCC TTATGTGAAG GTGGGTGGTG CCGGTTGGTT TGGTGACAGC GAAGGATTGC GCTCTGGCAG TGAGCGAGGA TTCTCTCCTA TTGTCGCTGC GGGTGTTGAA TATGCATTTA CCCCAAGACT GAGTGGGCGA CTGGAACACC AGTACACCGA CAGCTTAGGT GCTGATAGCA TTGGTTACAC GGACCATCAC CTCACAACGT TGGGGTTGAG TTGGCGCTTT GGGCATTCCG CTCCGGTTAC GGCTCCAACG CCTGAGGTGG TCACTCAAGT TGTTGAATTA CCACCAGTGG TTCAAATCGT AGAAAAGCGC CAGTTTGTGT ATTCAGAGCA GAAAGGCAAC AGCTTGTTGT TTGCGCATAA CTCCAGTGTA TTGAATAACA CATCGCAATT TGCTGATGTC GTTAGTTTTT TGAAACAACA TCCAACAGCC TCTGCTGTGA TTACAGGACA TACCGATAGC ACGGGCTCAG ATAAATATAA CCAATGGTTA TCAGAGCGCC GCGCGATTTC TGTTGCAAAT TACTTGGTTT CCCAAGGCGT GCAATCGGCG CAATTAACCT CTGTTGGTAA AGGCGAAACA GCATCGGTTG CGGATAACAC GACTGAAAAT GGCCGTGCGA TGAACCGTCG TGTTGAAATT ACCATCCCTG AATTTACCGT GACCAAAACG GTAAAGTAA
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Protein sequence | MKYKLILLTF LPFSFSTLAS EPPSYLPFQS YWYAGAGLGQ GHYSNGSNPQ SYDSVRDRFA GSVYLGYQVN PYLAPELSYQ FLGSAYANYE QGQISGDFQQ VVLAARFGYP LTTSLYPYVK VGGAGWFGDS EGLRSGSERG FSPIVAAGVE YAFTPRLSGR LEHQYTDSLG ADSIGYTDHH LTTLGLSWRF GHSAPVTAPT PEVVTQVVEL PPVVQIVEKR QFVYSEQKGN SLLFAHNSSV LNNTSQFADV VSFLKQHPTA SAVITGHTDS TGSDKYNQWL SERRAISVAN YLVSQGVQSA QLTSVGKGET ASVADNTTEN GRAMNRRVEI TIPEFTVTKT VK
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