| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_A0050 |
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| Symbol | |
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| ID | 1172473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004349 |
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| Strand | - |
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| Start bp | 41113 |
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| End bp | 42360 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637346509 |
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| Product | toxin secretion, membrane fusion protein |
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| Protein accession | NP_720386 |
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| Protein GI | 24376278 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.516709 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGACT TATTTCGCCA ACAAGTAGTT AACGAACAAA AGCAGCGGCT ATATGGCGAT
ATATCGTTAG CTCAACCATT ATCTATATAC ACTATTTCCA TAGCCATATT ATTAATCGTT
ACTGCGATTA TTTTATTTTT ATATTTTTCA CATTACGCTC GCAAAGAAAC GGTTCGCGGA
TATCTTGTCC CCGATAAAGG TGTGATAAAA ACCTATGCTA ATCGCATTGG AAATGTGGAT
ATCTTGCACG TAAAGGAAGG TAGTGATGTC AATGCAGGCG ACCCATTAGT AACAGTCATA
ATAAGAAGCA GCATGGCATC TGGTTTTGAG TTAAGCGAAA CACTGATAAG TGAGTTAAAA
CAACAGCAAA GTATTTTAAA TCAAGAATTA GATAACAACA TAGAGCTGAA TGCAGCCGAG
ACTCTTAGGC TCAAAAAAAG GTTGTCTGAC TTATCAGAAT CGATGAAGGT ATTATCTAGA
CAAAAACAGT TGTTAGCAGA TAAATTAAAC ATACAAGTTG CACAGAAAAA ACAACACGAC
AAGCTCTACA AAGATGGTTA TTTATCAGAG CTTGATTATC AGCTTCAATT ATCAAAATTA
ATTGAAGTAA AGCAAGAAGT GGAAAACTTA GAGTCGAACA AAATATCGAT TGACCGCGAG
TTAAATCAAA CTCACGCTGA ATTAGTGAGC TTACCGTTCC AATTTAATTT AAAACAGTCA
GATGTTCATA AGCGCCAATC TGATATTCAA AGACAATTAA ATGAAGCGGA GAATAGTTAC
ACATTTGTTA TACGCGCTCA AGAATCAGGT ACTGTGGCGG CAGTAAGTGT TGTTGAGGGC
GAGTTTATTG CCAGCAATCG CCCATTAATG AGCATTATCC CAAAGGGCTC TTCATTGGTA
GCAGAGTTAT TACTACCAAC AAGAAGTGCG GGGTTTGTTA AACAGGGTGA TGAGGCTAGA
TTACGCTTTG ATGCATTTCC TTATCAACGG TTTGGTTTTC TGCACAGTGA GGTATTGCGT
GTAGATAAAG CATTACTACT CGATGGTGAA GCCGATTTAC CCGTTAAGTT ATCAGAGCCT
GTTTACCGTA TAAAGACAAC CTTATCCGCG CAAGACATGC AGGCCTATGG TGAAGCATTC
CCCCTTAAAA GCGGCATGCT CTTAGAGGCA GATATAGTTC TGGACAGGCG CACGCTGCTC
GATTGGTTGC TTGACCCAAT TTACAGCCTG CGCGGAAGGG TGAGTTAA
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| Protein sequence | MSDLFRQQVV NEQKQRLYGD ISLAQPLSIY TISIAILLIV TAIILFLYFS HYARKETVRG
YLVPDKGVIK TYANRIGNVD ILHVKEGSDV NAGDPLVTVI IRSSMASGFE LSETLISELK
QQQSILNQEL DNNIELNAAE TLRLKKRLSD LSESMKVLSR QKQLLADKLN IQVAQKKQHD
KLYKDGYLSE LDYQLQLSKL IEVKQEVENL ESNKISIDRE LNQTHAELVS LPFQFNLKQS
DVHKRQSDIQ RQLNEAENSY TFVIRAQESG TVAAVSVVEG EFIASNRPLM SIIPKGSSLV
AELLLPTRSA GFVKQGDEAR LRFDAFPYQR FGFLHSEVLR VDKALLLDGE ADLPVKLSEP
VYRIKTTLSA QDMQAYGEAF PLKSGMLLEA DIVLDRRTLL DWLLDPIYSL RGRVS
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