Gene SO_A0045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_A0045 
Symbol 
ID1172468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004349 
Strand
Start bp33623 
End bp34993 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content46% 
IMG OID637346504 
Productphage integrase family site specific recombinase 
Protein accessionNP_720381 
Protein GI118725028 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.869382 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAG TGAAATTAAC ACAAGTGTTT ATTCGGTCAT TAGCTCGTCA AACACGCGCC 
TACACCATTC AAGACAGTCT CTGTCATGGC CTTGGCGTTA AAGTGATGCC CGATAAACCG
ATGCAGTACG TTATTAGCCG CCTTATTGAT AATCGGACAC GCACACGCAT TCTTGCGCCT
GTTAGTGCGC TAACGGTTAA AGCGGCACGG GAGAAAGCAA CAGGGCAGCT TCAAGCATGG
CGAGAGGAAC ACACTCAACC GAGCATGAGT GCTTCCCCCC GTTTTGATGT GTTTGTTGAA
CAAACATGGA AGCCGATGAT TTTTGAACAC TGGAAACCCA GTACAAAACG GTCAGTCTTG
CCCGCGCTGA ATAGACGCTT GTTAGCACAT TTTGGCCGTT ACCCGTTGCA CATGATTAAC
CATAAGATGG TGCAAGCATG GTTTGATGAG ATTAGTAAAA CGCGCAAAGG TGCCGCTAAC
CGTAACCTTG ATACATTGCA ATCCGTTTTC AAGTTAGCAT TGAGGCAGGG GCATTGCCTG
ACGAATCCCT GTATTGGTAT TCGGCAAAAC AAAAGGCGGG TATTAAATCG CTTTTTGAGT
GTTGCTGAAA TGCAGCGTTT ATCTGTGGCG CTTGATGAAT GTGAAGCGGT CGGCGGCAGT
ATTGCTCAAT GTGCTGATGT TTTGCGGCTT TTACTGCTAA CAGGCTGCCG ATTATCGGAA
ATCACTTTTT TAAAAGGGGA GTACGTGCGC GGCAATGAAT TGCATTTACC TGACAGTAAA
ACGGGGGCAA AAGTGCTTTA TATTGGTCAA GCCGCAGTTG ACATATTAAG TCGCTATCAC
TGTAAGGCCA ATACAGAACT TTTTCCGATG AAACAGGGCG CTTCCACCTC ATTGGTACAG
TCGCTATGGC TAAGGTTGCG AAAACAGATA GGGGTTGAAG ATGTGAGATT GCATGATTTA
CGGCATACCT TTGCAAGTTA TGCCGTCATG GACGGATGCA GTATTCCGAT GGTGGCCTCT
TTACTGGGGC ATAAAAAAGT CACAATGACA TTACGATATA CCCATGTAGG GGATGATAGC
GTAGAGCAAG CCTCTGAGGT TATTGGGGCT GTCTTCAAAG GCATTTTTAC TCAGCCTGAG
CCCCCTAAGC CCTTAATCCC CCGAACTAAT GAGACTCCCA TGCCAGCCGT AAAAGTAAAG
CAAAAGCGTC TGCCAGAAAG AAAACCAACA GCGAAGCCAA AGCCTAAAGC GGTGAAGAAA
GTGAAGCAAG TTAAACCATT ACAGAAACTG CCCACTTTAA CTAAAGAGGA ACTTCGTGCG
ATACAACGGT TTAGGGATAG TGAGCTTTTT GATAGAGTGA AAATTGGCTA A
 
Protein sequence
MKIVKLTQVF IRSLARQTRA YTIQDSLCHG LGVKVMPDKP MQYVISRLID NRTRTRILAP 
VSALTVKAAR EKATGQLQAW REEHTQPSMS ASPRFDVFVE QTWKPMIFEH WKPSTKRSVL
PALNRRLLAH FGRYPLHMIN HKMVQAWFDE ISKTRKGAAN RNLDTLQSVF KLALRQGHCL
TNPCIGIRQN KRRVLNRFLS VAEMQRLSVA LDECEAVGGS IAQCADVLRL LLLTGCRLSE
ITFLKGEYVR GNELHLPDSK TGAKVLYIGQ AAVDILSRYH CKANTELFPM KQGASTSLVQ
SLWLRLRKQI GVEDVRLHDL RHTFASYAVM DGCSIPMVAS LLGHKKVTMT LRYTHVGDDS
VEQASEVIGA VFKGIFTQPE PPKPLIPRTN ETPMPAVKVK QKRLPERKPT AKPKPKAVKK
VKQVKPLQKL PTLTKEELRA IQRFRDSELF DRVKIG