Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_A0045 |
Symbol | |
ID | 1172468 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004349 |
Strand | + |
Start bp | 33623 |
End bp | 34993 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637346504 |
Product | phage integrase family site specific recombinase |
Protein accession | NP_720381 |
Protein GI | 118725028 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.869382 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATAG TGAAATTAAC ACAAGTGTTT ATTCGGTCAT TAGCTCGTCA AACACGCGCC TACACCATTC AAGACAGTCT CTGTCATGGC CTTGGCGTTA AAGTGATGCC CGATAAACCG ATGCAGTACG TTATTAGCCG CCTTATTGAT AATCGGACAC GCACACGCAT TCTTGCGCCT GTTAGTGCGC TAACGGTTAA AGCGGCACGG GAGAAAGCAA CAGGGCAGCT TCAAGCATGG CGAGAGGAAC ACACTCAACC GAGCATGAGT GCTTCCCCCC GTTTTGATGT GTTTGTTGAA CAAACATGGA AGCCGATGAT TTTTGAACAC TGGAAACCCA GTACAAAACG GTCAGTCTTG CCCGCGCTGA ATAGACGCTT GTTAGCACAT TTTGGCCGTT ACCCGTTGCA CATGATTAAC CATAAGATGG TGCAAGCATG GTTTGATGAG ATTAGTAAAA CGCGCAAAGG TGCCGCTAAC CGTAACCTTG ATACATTGCA ATCCGTTTTC AAGTTAGCAT TGAGGCAGGG GCATTGCCTG ACGAATCCCT GTATTGGTAT TCGGCAAAAC AAAAGGCGGG TATTAAATCG CTTTTTGAGT GTTGCTGAAA TGCAGCGTTT ATCTGTGGCG CTTGATGAAT GTGAAGCGGT CGGCGGCAGT ATTGCTCAAT GTGCTGATGT TTTGCGGCTT TTACTGCTAA CAGGCTGCCG ATTATCGGAA ATCACTTTTT TAAAAGGGGA GTACGTGCGC GGCAATGAAT TGCATTTACC TGACAGTAAA ACGGGGGCAA AAGTGCTTTA TATTGGTCAA GCCGCAGTTG ACATATTAAG TCGCTATCAC TGTAAGGCCA ATACAGAACT TTTTCCGATG AAACAGGGCG CTTCCACCTC ATTGGTACAG TCGCTATGGC TAAGGTTGCG AAAACAGATA GGGGTTGAAG ATGTGAGATT GCATGATTTA CGGCATACCT TTGCAAGTTA TGCCGTCATG GACGGATGCA GTATTCCGAT GGTGGCCTCT TTACTGGGGC ATAAAAAAGT CACAATGACA TTACGATATA CCCATGTAGG GGATGATAGC GTAGAGCAAG CCTCTGAGGT TATTGGGGCT GTCTTCAAAG GCATTTTTAC TCAGCCTGAG CCCCCTAAGC CCTTAATCCC CCGAACTAAT GAGACTCCCA TGCCAGCCGT AAAAGTAAAG CAAAAGCGTC TGCCAGAAAG AAAACCAACA GCGAAGCCAA AGCCTAAAGC GGTGAAGAAA GTGAAGCAAG TTAAACCATT ACAGAAACTG CCCACTTTAA CTAAAGAGGA ACTTCGTGCG ATACAACGGT TTAGGGATAG TGAGCTTTTT GATAGAGTGA AAATTGGCTA A
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Protein sequence | MKIVKLTQVF IRSLARQTRA YTIQDSLCHG LGVKVMPDKP MQYVISRLID NRTRTRILAP VSALTVKAAR EKATGQLQAW REEHTQPSMS ASPRFDVFVE QTWKPMIFEH WKPSTKRSVL PALNRRLLAH FGRYPLHMIN HKMVQAWFDE ISKTRKGAAN RNLDTLQSVF KLALRQGHCL TNPCIGIRQN KRRVLNRFLS VAEMQRLSVA LDECEAVGGS IAQCADVLRL LLLTGCRLSE ITFLKGEYVR GNELHLPDSK TGAKVLYIGQ AAVDILSRYH CKANTELFPM KQGASTSLVQ SLWLRLRKQI GVEDVRLHDL RHTFASYAVM DGCSIPMVAS LLGHKKVTMT LRYTHVGDDS VEQASEVIGA VFKGIFTQPE PPKPLIPRTN ETPMPAVKVK QKRLPERKPT AKPKPKAVKK VKQVKPLQKL PTLTKEELRA IQRFRDSELF DRVKIG
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