Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_A0038 |
Symbol | |
ID | 1172633 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004349 |
Strand | - |
Start bp | 28346 |
End bp | 29505 |
Gene Length | 1160 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637346497 |
Product | ISSod1, transposase OrfA |
Protein accession | NP_720374 |
Protein GI | 118725026 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCTGA AAAAATCACA TAAGAGTTAT CCGCAGGCAT TTAAAGATGA AGCCGTCTTG ATGGTGCTGG AGCAAGGTTA TAGCGTTGCC GATGCGGCAA AGTCTCTTGG AGTTAGCACG AGCCTGCTTT ACAACTGGAA GGAAAAACAC GAAGCCCTGC AACAAGGCAT CACCTTAGAA GAGTCTGAGC GTGATGAGTT GAAGCGATTG CGTAGAGAAA ACAAAGAATT ACGCATGGAG AAAGAAATTC TAAAAAAGGC AAGCGCCTTC TTTGCGAGAG AAATGAAGTA AGATTTCGTT TCATCAAACT GCAATCTCAC CTGTTTCCCA TAACACTGTT ATGTCGAGTA ATGAGTGTCA GTAAGTCAGG CTATTACGAT TGGCATAAAC GCCCTGCAAA CGTGATAAGC GTTGAAACAC TGAAGCTTTA TCGCCTTGTT CGACAGCTAT TTAAGCAAAG TCGAGGCAGC TTAGGGAATC GTGAAATGGT GAAGAAATTG CGCAAGGAAG GCTACCAGGT TGGTCGCTAT CTCGTTCGTA AAATTATGCA CCGCCTTCGA CTCAAAGCAA CCCAGCGATG TGCTTACAAG GTGACGACAC AGCGAAAACA CTCAGATGCA GTGGCTGATA ACCTGTTAAA CATGAACTTT AATCCAGTAT CGGCTAATCA GGTCTGGGCG GGTGACGTGA CCTATTTAAA GACGGGTGAA GGCTGGATGT ACTTAGCTGT GGTGATGGAT TTATATTCAC GCCGGATTGT GGGATGGCGC ATAGACAAAC GCATGACCAC AGATTTGATA TCCAAGGCAT TAATAAAAGC CTACAACCTG CGACAACCAG CGCGAGGGCT GGTATTTCAC AGTGACCGAG GCTCGCAATA TACCAGTAAA CAATTCGGTA GGCTGCTATC GAGCTATGGT ATCCGAGCCA GCATGGGTGA TGTGGGTGCG TGTTGGGATA ATGCCGTTGT TGAGCGATTC TTTGGTAGCT TGAAACACGA TTGGATTTTT AAAGTTGCTC AACCAACAAG GGAGTTTATG AAGCAAGATG TGACGGCTTA CATCAAATAT TACAACTTGG AGCGACTTCA TTCTGCTAAT AACGATCTGT CACCTGTAGA GTTTGAGAAT TCTCAAGTAA AAGTGTCCAG TTTGGGTTGA
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Protein sequence | MSLKKSHKSY PQAFKDEAVL MVLEQGYSVA DAAKSLGVST SLLYNWKEKH EALQQGITLE ESERDELKRL RRENKELRME KENSKKGKRL LCERNEVRFR FIKLQSHLFP ITLLCRVMSV SKSGYYDWHK RPANVISVET LKLYRLVRQL FKQSRGSLGN REMVKKLRKE GYQVGRYLVR KIMHRLRLKA TQRCAYKVTT QRKHSDAVAD NLLNMNFNPV SANQVWAGDV TYLKTGEGWM YLAVVMDLYS RRIVGWRIDK RMTTDLISKA LIKAYNLRQP ARGLVFHSDR GSQYTSKQFG RLLSSYGIRA SMGDVGACWD NAVVERFFGS LKHDWIFKVA QPTREFMKQD VTAYIKYYNL ERLHSANNDL SPVEFENSQV KVSSLG
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