| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_A0028 |
|---|
| Symbol | |
|---|
| ID | 1172623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004349 |
|---|
| Strand | + |
|---|
| Start bp | 21138 |
|---|
| End bp | 22297 |
|---|
| Gene Length | 1160 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637346487 |
|---|
| Product | ISSod1, transposase OrfA |
|---|
| Protein accession | NP_720364 |
|---|
| Protein GI | 118725024 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.234978 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTGA AAAAATCACA TAAGAGTTAT CCGCAGGCAT TTAAAGATGA AGCCGTCTTG
ATGGTGCTGG AGCAAGGTTA TAGCGTTGCC GATGCGGCAA AGTCTCTTGG AGTTAGCACG
AGCCTGCTTT ACAACTGGAA GGAAAAACAC GAAGCCCTGC AACAAGGCAT CACCTTAGAA
GAGTCTGAGC GTGATGAGTT GAAGCGATTG CGTAGAGAAA ACAAAGAATT ACGCATGGAG
AAAGAAATTC TAAAAAAGGC AAGCGCCTTC TTTGCGAGAG AAATGAAGTA AGATTTCGTT
TCATCAAACT GCAATCTCAC CTGTTTCCCA TAACACTGTT ATGTCGAGTA ATGAGTGTCA
GTAAGTCAGG CTATTACGAT TGGCATAAAC GCCCTGCAAA CGTGATAAGC GTTGAAACAC
TGAAGCTTTA TCGCCTTGTT CGACAGCTAT TTAAGCAAAG TCGAGGCAGC TTAGGGAATC
GTGAAATGGT GAAGAAATTG CGCAAGGAAG GCTACCAGGT TGGTCGCTAT CTCGTTCGTA
AAATTATGCA CCGCCTTCGA CTCAAAGCAA CCCAGCGATG TGCTTACAAG GTGACGACAC
AGCGAAAACA CTCAGATGCA GTGGCTGATA ACCTGTTAAA CATGAACTTT AATCCAGTAT
CGGCTAATCA GGTCTGGGCG GGTGACGTGA CCTATTTAAA GACGGGTGAA GGCTGGATGT
ACTTAGCTGT GGTGATGGAT TTATATTCAC GCCGGATTGT GGGATGGCGC ATAGACAAAC
GCATGACCAC AGATTTGATA TCCAAGGCAT TAATAAAAGC CTACAACCTG CGACAACCAG
CGCGAGGGCT GGTATTTCAC AGTGACCGAG GCTCGCAATA TACCAGTAAA CAATTCGGTA
GGCTGCTATC GAGCTATGGT ATCCGAGCCA GCATGGGTGA TGTGGGTGCG TGTTGGGATA
ATGCCGTTGT TGAGCGATTC TTTGGTAGCT TGAAACACGA TTGGATTTTT AAAGTTGCTC
AACCAACAAG GGAGTTTATG AAGCAAGATG TGACGGCTTA CATCAAATAT TACAACTTGG
AGCGACTTCA TTCTGCTAAT AACGATCTGT CACCTGTAGA GTTTGAGAAT TCTCAAGTAA
AAGTGTCCAG TTTGGGTTGA
|
|---|
| Protein sequence | MSLKKSHKSY PQAFKDEAVL MVLEQGYSVA DAAKSLGVST SLLYNWKEKH EALQQGITLE
ESERDELKRL RRENKELRME KENSKKGKRL LCERNEVRFR FIKLQSHLFP ITLLCRVMSV
SKSGYYDWHK RPANVISVET LKLYRLVRQL FKQSRGSLGN REMVKKLRKE GYQVGRYLVR
KIMHRLRLKA TQRCAYKVTT QRKHSDAVAD NLLNMNFNPV SANQVWAGDV TYLKTGEGWM
YLAVVMDLYS RRIVGWRIDK RMTTDLISKA LIKAYNLRQP ARGLVFHSDR GSQYTSKQFG
RLLSSYGIRA SMGDVGACWD NAVVERFFGS LKHDWIFKVA QPTREFMKQD VTAYIKYYNL
ERLHSANNDL SPVEFENSQV KVSSLG
|
|---|
| |