Gene SO_A0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_A0028 
Symbol 
ID1172623 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004349 
Strand
Start bp21138 
End bp22297 
Gene Length1160 bp 
Protein Length386 aa 
Translation table11 
GC content45% 
IMG OID637346487 
ProductISSod1, transposase OrfA 
Protein accessionNP_720364 
Protein GI118725024 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.234978 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCTGA AAAAATCACA TAAGAGTTAT CCGCAGGCAT TTAAAGATGA AGCCGTCTTG 
ATGGTGCTGG AGCAAGGTTA TAGCGTTGCC GATGCGGCAA AGTCTCTTGG AGTTAGCACG
AGCCTGCTTT ACAACTGGAA GGAAAAACAC GAAGCCCTGC AACAAGGCAT CACCTTAGAA
GAGTCTGAGC GTGATGAGTT GAAGCGATTG CGTAGAGAAA ACAAAGAATT ACGCATGGAG
AAAGAAATTC TAAAAAAGGC AAGCGCCTTC TTTGCGAGAG AAATGAAGTA AGATTTCGTT
TCATCAAACT GCAATCTCAC CTGTTTCCCA TAACACTGTT ATGTCGAGTA ATGAGTGTCA
GTAAGTCAGG CTATTACGAT TGGCATAAAC GCCCTGCAAA CGTGATAAGC GTTGAAACAC
TGAAGCTTTA TCGCCTTGTT CGACAGCTAT TTAAGCAAAG TCGAGGCAGC TTAGGGAATC
GTGAAATGGT GAAGAAATTG CGCAAGGAAG GCTACCAGGT TGGTCGCTAT CTCGTTCGTA
AAATTATGCA CCGCCTTCGA CTCAAAGCAA CCCAGCGATG TGCTTACAAG GTGACGACAC
AGCGAAAACA CTCAGATGCA GTGGCTGATA ACCTGTTAAA CATGAACTTT AATCCAGTAT
CGGCTAATCA GGTCTGGGCG GGTGACGTGA CCTATTTAAA GACGGGTGAA GGCTGGATGT
ACTTAGCTGT GGTGATGGAT TTATATTCAC GCCGGATTGT GGGATGGCGC ATAGACAAAC
GCATGACCAC AGATTTGATA TCCAAGGCAT TAATAAAAGC CTACAACCTG CGACAACCAG
CGCGAGGGCT GGTATTTCAC AGTGACCGAG GCTCGCAATA TACCAGTAAA CAATTCGGTA
GGCTGCTATC GAGCTATGGT ATCCGAGCCA GCATGGGTGA TGTGGGTGCG TGTTGGGATA
ATGCCGTTGT TGAGCGATTC TTTGGTAGCT TGAAACACGA TTGGATTTTT AAAGTTGCTC
AACCAACAAG GGAGTTTATG AAGCAAGATG TGACGGCTTA CATCAAATAT TACAACTTGG
AGCGACTTCA TTCTGCTAAT AACGATCTGT CACCTGTAGA GTTTGAGAAT TCTCAAGTAA
AAGTGTCCAG TTTGGGTTGA
 
Protein sequence
MSLKKSHKSY PQAFKDEAVL MVLEQGYSVA DAAKSLGVST SLLYNWKEKH EALQQGITLE 
ESERDELKRL RRENKELRME KENSKKGKRL LCERNEVRFR FIKLQSHLFP ITLLCRVMSV
SKSGYYDWHK RPANVISVET LKLYRLVRQL FKQSRGSLGN REMVKKLRKE GYQVGRYLVR
KIMHRLRLKA TQRCAYKVTT QRKHSDAVAD NLLNMNFNPV SANQVWAGDV TYLKTGEGWM
YLAVVMDLYS RRIVGWRIDK RMTTDLISKA LIKAYNLRQP ARGLVFHSDR GSQYTSKQFG
RLLSSYGIRA SMGDVGACWD NAVVERFFGS LKHDWIFKVA QPTREFMKQD VTAYIKYYNL
ERLHSANNDL SPVEFENSQV KVSSLG