Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_A0016 |
Symbol | |
ID | 1172612 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004349 |
Strand | - |
Start bp | 12945 |
End bp | 15911 |
Gene Length | 2967 bp |
Protein Length | 988 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637346478 |
Product | ISSod9, transposase |
Protein accession | NP_720355 |
Protein GI | 24376247 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4644] Transposase and inactivated derivatives, TnpA family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTCGCC GCTCAATCCT ATCCGCCGCA GAGCGAGACA GCCTGCTGGT GTTACCCGAT ACCCAAGACG AACTGATCCG CCACTATACG TTTAGCGAAC CCGATCTATC ACTGATACGG CAGCGGCGCG GTGATGCTAA CCGCTTGGGG ATCGCGGTAC AGTTATGCTT GCTGCGCTTC CCAGGCCAGG GCTTGTTGCC CGACGCTACG GTGCCAATGC CTCTGCTGCA ATGGATAGGA CAACAGTTAC AGCTCGATCC TGTATGTTGG CCGCAGTATG CCGAGCGAGA GGAGACACGG CGCGAGCACT TGCTCGAACT GCGGGTGTAT CTTGGCATGG AACCATTTAG TCAAGTGCAC CATCGGCAGG CTGTCCATAC CACGACCGAA CTGGCCTTGC AGACTGACAA GGGCATAGTG TTGGCCAACA GCGTAGTCGA GACGCTGCGT CATAAACACA TCATTTTGCC AACGTTAGAT GTTGTCGAGC GCGTCTGTGC CGAGGCTCTA ACCCGTGCAA ACCGGCGTAT CTACGACACC TTGACCGAAC CACTATCAGG CTCGCACCGC CACCGGCTCG ATGATCTGCT CAAGCTTCGG GACAACAACA AAACGACTAC GCTGGCTTGG CTTCGCCTGT CTCCGGTCAA ACCCAATTCG CGGCACATGC TTGAGCACAT CGAACGACTC AAGGTATGGC AGGCGCTTGA TCTTCCTATT GGTGTCGATC GTCTGATCCA CCAAAACCGA TTGCTCAAGA TCGCCCGAGA AGGCGGACAG ATGACCCCCG CCGATTTGGC CAAGTTCGAG CCACAACGCC GCTATGCGAC TTTGGTTGCG CTAGCCATCG AGGGGATGGC CACTGTTACA GATGAAATTA TTGATCTGCA TGACCGCATC ATGGGCAAGC TGTTCAATGA TGCCAAGAAG CGACATCAGA AACAGTTTCA GGCATCGGGG AAGGCTATCA ATGCCAAGGT GCGCCTGTTC GGCCGTATCG GCCAAGTGTT GATCGACGCT AAGCAAGCGG GTGATGATCC GTTTGCTGCT ATCGAGGGCG TCATATCCTG GGAGGCCTTT GCCAAGAGCG TGACAGAGGC ACAATCGCTC GCGCAGCCCG AGGAATTCGA TTTCCTGTAC CGTCTCGGTG AGAGCTACGC CACACTACGC CGTTACGCAC CGACCTTCCT CACCGCGCTA AAGTTGCGGG CCGCACCGGC TGCCAAAGGT GTATTGGAGG CCATCGAAGT ACTGCGCAGC ATGAACAACG ACAACGCCCG AAAAGTACCT GCAGATGCGC CAATTGATTT CATCAAGCCG CGTTGGCAGA AGCTGGTGAT AACCGATACC GGCATCGACC GGCGTTACTA CGAGCTATGC GCGCTGTCGG AGATGAGGAA CGCATTGCGT TCCGGTGACA TCTGGGTACA GGGATCGCGC CAGTTCAAGG ACTTCGAGGA CTACCTTGTA CCACCCGCGA AATTCGTCAG TCTCAAGCAG ACCAATCAAT TGCCGCTGGC CGTAGCCACC GACTGTGAGC AGTATCTGAA TGAACGGCTG ACGCAATTGG AAACGCAGCT CGCCACCGTC AACAGCATGG CGCAGGCTAA CGAATTACCG GATGCCATCA TCACGGCCTC TGGCCTAAAG ATAACGCCGC TGGATGCAGT AGTACCAGAT ACCGCGCAGC GCCTTATCGA TCAGGCTGCT AGGATCCTGC CGCACGTCAA GATCACTGAG TTACTGCTTG AAGTGGACGA ATGGACGGGC TTTACCAGGC ACTTCGCACA CCTGAAATCT GGTGTTCTGG CCAAGGACAA GAACCTGCTA CTGACGACTA TCCTTGCCGA TGCGATCAAT CTGGGTCTGA CCAAGATGGC AGAATCGTGT CCAGGAACGA CTTATGCCAA GCTCGCTTGG CTGCAAGCCT GGCATATCCG TGACGAAACC TATGGCGCGG CCTTGTCCGA GCTGGTCAAT GCGCAGTACC GGCATCCGTT TGCCGAACAT TGGGGCGATG GTTCTACATC CTCCTCTGAC GGCCAGAATT TTCGCACCGG CAACAAGGCG GAGAGTACGG GGCACATCAA TCCGAAATAT GGCAGTAGTC CAGGACGGAC CTTTTACACG CATATTTCCG ACCAGTACGC ACCATTTCAT ACTAAGGTGG TCAATGTCGG TGTGCGCGAC TCAACCTACG TGCTCGACGG CCTGCTCTAC CATGAATCTG ACTTACGGAT CGAAGAGCAC TACACCGACA CGGCTGGCTT CACCGATCAC GTTTTCGCGT TGATGCACCT GTTGGGGTTT CGCTTCGCAC CGCGTATCCG CGACTTGGGT GAGACCAAGC TCTACATTCC AAAGCGCGAT GTCACCTACG AGGGATTGAA ATCAATGATT GGCGGGACGC TCAACATCAA GCTAATCCGT ACACATTGGG ACGAGATCTT GCGGCTGGCT ACCTCGATAA AACAGGGAAC GGTGACGGCC TCACTCATGC TGAGGAAGCT TGGCAGCTAC CCACGTCAGA ATGGCTTGGC GGTCGCCTTG CGCGAATTGG GGCGTATCGA GCGCACGCTG TTCATTCTGG ATTGGCTGCA AAGTGTCGAG CTCCGCCGCC GGGTACATGC CGGACTGAAT AAGGGGGAGG CTCGTAACGC CTTGGCTCGT GCCGTGTTTT TCAATCGACT GGGGGAGATC CGTGACCGCA GTTTTGAGCA ACAGCGTTAC CGGGCAAGTG GCCTTAACTT GGTGACTGCC GCCATCGTGC TATGGAACAC CGTCTATCTG GAAAGGGTGG CACATGGGTT ACGTGCCAAG GGACATGCCG TCGATGAAGA GTTATTGCAG TACCTATCGC CGCTAGGCTG GGAGCACATC AACCTGACAG GGGATTATCT GTGGCGCAGC AGCGCCAAGA TAGGTTCAGG TAAATTCAGG CCTCTACGAC CTCTATCACC GGCTTAG
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Protein sequence | MPRRSILSAA ERDSLLVLPD TQDELIRHYT FSEPDLSLIR QRRGDANRLG IAVQLCLLRF PGQGLLPDAT VPMPLLQWIG QQLQLDPVCW PQYAEREETR REHLLELRVY LGMEPFSQVH HRQAVHTTTE LALQTDKGIV LANSVVETLR HKHIILPTLD VVERVCAEAL TRANRRIYDT LTEPLSGSHR HRLDDLLKLR DNNKTTTLAW LRLSPVKPNS RHMLEHIERL KVWQALDLPI GVDRLIHQNR LLKIAREGGQ MTPADLAKFE PQRRYATLVA LAIEGMATVT DEIIDLHDRI MGKLFNDAKK RHQKQFQASG KAINAKVRLF GRIGQVLIDA KQAGDDPFAA IEGVISWEAF AKSVTEAQSL AQPEEFDFLY RLGESYATLR RYAPTFLTAL KLRAAPAAKG VLEAIEVLRS MNNDNARKVP ADAPIDFIKP RWQKLVITDT GIDRRYYELC ALSEMRNALR SGDIWVQGSR QFKDFEDYLV PPAKFVSLKQ TNQLPLAVAT DCEQYLNERL TQLETQLATV NSMAQANELP DAIITASGLK ITPLDAVVPD TAQRLIDQAA RILPHVKITE LLLEVDEWTG FTRHFAHLKS GVLAKDKNLL LTTILADAIN LGLTKMAESC PGTTYAKLAW LQAWHIRDET YGAALSELVN AQYRHPFAEH WGDGSTSSSD GQNFRTGNKA ESTGHINPKY GSSPGRTFYT HISDQYAPFH TKVVNVGVRD STYVLDGLLY HESDLRIEEH YTDTAGFTDH VFALMHLLGF RFAPRIRDLG ETKLYIPKRD VTYEGLKSMI GGTLNIKLIR THWDEILRLA TSIKQGTVTA SLMLRKLGSY PRQNGLAVAL RELGRIERTL FILDWLQSVE LRRRVHAGLN KGEARNALAR AVFFNRLGEI RDRSFEQQRY RASGLNLVTA AIVLWNTVYL ERVAHGLRAK GHAVDEELLQ YLSPLGWEHI NLTGDYLWRS SAKIGSGKFR PLRPLSPA
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