Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_A0004 |
Symbol | |
ID | 1172600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004349 |
Strand | - |
Start bp | 3938 |
End bp | 5650 |
Gene Length | 1713 bp |
Protein Length | 570 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 637346466 |
Product | type II DNA modification methyltransferase |
Protein accession | NP_720343 |
Protein GI | 24376235 |
COG category | [V] Defense mechanisms |
COG ID | [COG0286] Type I restriction-modification system methyltransferase subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.606152 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTATGA GTAGAGATTG TATTTTGGAT TCAACTGTAG ATAGATACCA ACACGTGGGA TGTAGAAAAA GTGAAGGCGC TCATTATACA CCTACAAGAC TTAGTCAATT TGTTAGCGAA AAGATAATAG AAAAACTTAA GAAAAAAGAA AGTATTGTTA TTGCAGATCC TGCTATCGGT GATGGTGAGT TAATTCTCAG TTTTTTATCC TCTCTAGATT CAACTGATAA TATTGAAGTT ATTGGTTTCG ATATTAATCT AGAATCAATT GAACTAAGCA AAAAAAGAAT TTTAAACTTT TACCCTAATG TAAGGATAAA TTTAATTCAC GGTGATTATT TGGATTATTG CATTAATGGT AATTCAGATT TGTGTGAGTA TAAATTACCA AAATTTGACG CAATTATTGC TAACCCACCA TATGTAAGAA CTCAAGTGTT GGGAGCTGAA CAATCTCAAT TTTTATCTAA AAATTTTGGA TTAAAAGGCA GAGTTGATAT ATATCAAGCA TTTCTTATTG GTATGAGCAA GTGTTTGTCG GAAGATGGTG TTGCGGGAGT TATAGTTTCA AACAGATTTT TAACAACCAA AGGAACCGGA GCACTAAGGC AATCTCTACA CGATTTATAT GATATATATA ATATTTGGGA TTTTGGGGAC ACAAAGTTGT TTGAAGCTGC TGTTTTGCCT GCAGTTCTGT TATTTAAAAT GAAAGCTGAA AAACCTGATT TTTCGACAGA GTTTCGCTCT ATTTATGAAA CAAATGAAAA TGAAGTTGAT TTTGCCGAAA CACCAGTTGA TGCAATTTCA TTGGATGGTG TTGTAAGGTG TTCTAATGGT AAGAATTACC TTATAAAGGC AGGACTTCTT GATTATGATT CATCACCAAA AGATATTTGG AGGGTGAAAG ATCTTACTTC TGAAAAGTGG TTGGATGATG TTTATAGAAA AACATGGGCA ACTTTTGGTG AAGTAGGTAA AATTCGAGTT GGCGTAAAGA CTACGGCTGA TAACGTTTTT ATCAAAAGTT CTTGGATTGA TGAAACAGGG CTAGTACCAG AGCTTATTAG GCCGTTGATT ACACATCATG TAGCTGAAAG GTTTAAGCAA TCAGATGCAG AAACAAAATA TATCCTTTAT ACACATGAGA TGGTGAATGG TAAGAGGAAG GCTATCGATA TTGATAAATA CCCAATCAGC AAAATGTACC TAGAGCAACA TAGAGTACAG CTTGAAGGAC GTAATTATGT AATTGAGGCT AATCGTAAAT GGTTCGAAAT ATGGGTTCCT CAAAGTCCTT TACTATGGGC AGAAAATAAA ATTGTATTCA GAGATATTTG TGAAGAGCCA ACATTTTGGC TAGATAACAA GCAATCTATC GTTAACGGAG ATTGTTATTG GATGGTTAAT GACTACAAAA AAGAAGAAAC AGATCTTCTT TGGTTAGTTT TGGCTGTAGC AAACTCAAAG TTTATAGAAT ATTTTTACGA TATAAAGTTC AATAATAAGT TGTACTCTAA TAAAAGACGT TTTATATCAC AATATGTTGA GCAGTTTCCG CTTCCAGATC CAAAATCTGT AATCTCAGTA AAAATGATCA TGTTAGCTAA ATCTATTTAT AACTGTACAG ATAAACAAGA AAGGAATGAA AGTGAAAAAC TTTTAGATGA TCTGGTTTGG GAGGCATTTG ACCTCCCTTG TCCAATATTT TAA
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Protein sequence | MTMSRDCILD STVDRYQHVG CRKSEGAHYT PTRLSQFVSE KIIEKLKKKE SIVIADPAIG DGELILSFLS SLDSTDNIEV IGFDINLESI ELSKKRILNF YPNVRINLIH GDYLDYCING NSDLCEYKLP KFDAIIANPP YVRTQVLGAE QSQFLSKNFG LKGRVDIYQA FLIGMSKCLS EDGVAGVIVS NRFLTTKGTG ALRQSLHDLY DIYNIWDFGD TKLFEAAVLP AVLLFKMKAE KPDFSTEFRS IYETNENEVD FAETPVDAIS LDGVVRCSNG KNYLIKAGLL DYDSSPKDIW RVKDLTSEKW LDDVYRKTWA TFGEVGKIRV GVKTTADNVF IKSSWIDETG LVPELIRPLI THHVAERFKQ SDAETKYILY THEMVNGKRK AIDIDKYPIS KMYLEQHRVQ LEGRNYVIEA NRKWFEIWVP QSPLLWAENK IVFRDICEEP TFWLDNKQSI VNGDCYWMVN DYKKEETDLL WLVLAVANSK FIEYFYDIKF NNKLYSNKRR FISQYVEQFP LPDPKSVISV KMIMLAKSIY NCTDKQERNE SEKLLDDLVW EAFDLPCPIF
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