| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4747 |
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| Symbol | atpD |
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| ID | 1172323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4958626 |
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| End bp | 4960017 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637346451 |
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| Product | F0F1 ATP synthase subunit beta |
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| Protein accession | NP_720263 |
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| Protein GI | 24376219 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0055] F0F1-type ATP synthase, beta subunit |
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| TIGRFAM ID | [TIGR01039] ATP synthase, F1 beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACAG GTACTGTTGT CCAAGTGATT GGCGCGGTTG TGGACGTAGA GTTTCCACAA
GATGCCGTAC CTCAGGTATA TGACGCTCTG AAGATCACAG GTGAAGGCTC CTGTAATGGT
TTGGTGCTGG AAGTTCAGCA ACAACTAGGT GGTGGTGTAG TTCGTACCAT CGCTATGGGT
ACTTCTGATG GTCTGCGTCG TGGTCTTGAG GTAGTAAACT CAGGTTCACC TATTTCTGTT
CCTGTTGGTA CAGCCACTCT TGGCCGTATC ATGAACGTTT TAGGCGACCC TATTGATGAA
GCGGGTGCAA TCGGTGAAGA AGAACGTTAT GTGATTCACC GTGCAGCTCC TTCATACGAA
GAGCAATCAA ACACGACTGA ACTGTTAGAG ACTGGTATCA AGGTTATCGA CCTTGTATGT
CCATTCGCTA AGGGTGGTAA AGTAGGTCTG TTCGGTGGTG CGGGTGTTGG TAAGACAGTT
AACATGATGG AACTGATTAA CAACATCGCT AAAGCTCACT CAGGTCTTTC TGTATTCGCC
GGTGTAGGTG AGCGTACTCG TGAGGGTAAC GACTTCTACT ACGAGATGAA GGATTCTGGC
GTTCTCGACA AAGTAGCCAT GGTGTATGGC CAAATGAACG AGCCACCAGG AAACCGTCTG
CGTGTAGCAC TGACTGGTCT GACTATGGCT GAGAAATTCC GTGACGAAGG TCGTGACGTA
CTGTTGTTCG TTGACAACAT CTACCGTTAC ACCCTAGCCG GTACTGAAGT ATCAGCACTG
TTAGGTCGTA TGCCTTCTGC GGTAGGTTAC CAACCCACTC TGGCTGAAGA AATGGGCGTT
CTGCAAGAGC GTATTACTTC AACTAAGACG GGTTCTATTA CCTCTGTACA AGCGGTATAC
GTACCTGCGG ACGACTTGAC TGACCCGTCA CCAGCAACAA CCTTCGCTCA CTTAGATGCG
ACTGTTGTAT TGTCACGTCA AATCGCTTCT CTGGGTATTT ACCCAGCGGT TGACCCATTG
GATTCGACTT CACGTCAATT AGATCCATTA GTGGTTGGTC AAGAGCACTA TGACGTAGCT
AACGGTGTAC AAACTGTTCT GCAACGCTAC AAAGAGCTGA AAGACATTAT TGCGATTCTG
GGTATGGACG AATTGTCAGA TGATGACAAG ATGACCGTTT CCCGTGCACG TAAGATTGAG
CGTTTCTTGT CTCAGCCTTT CCACGTAGCA GAAGTCTTTA CTGGTTCTCC TGGTAAGTAC
GTTTCTCTGA AAGACACTAT CCGTGGCTTC AAGGGAATTC TGAGTGGCGA GTTCGACCAC
ATTCCAGAAC AAGCGTTCTA CATGGTTGGT TCTATCGACG AAGCTGTCGA GAAAGCTAAC
AAAAAGAAAT AA
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| Protein sequence | MSTGTVVQVI GAVVDVEFPQ DAVPQVYDAL KITGEGSCNG LVLEVQQQLG GGVVRTIAMG
TSDGLRRGLE VVNSGSPISV PVGTATLGRI MNVLGDPIDE AGAIGEEERY VIHRAAPSYE
EQSNTTELLE TGIKVIDLVC PFAKGGKVGL FGGAGVGKTV NMMELINNIA KAHSGLSVFA
GVGERTREGN DFYYEMKDSG VLDKVAMVYG QMNEPPGNRL RVALTGLTMA EKFRDEGRDV
LLFVDNIYRY TLAGTEVSAL LGRMPSAVGY QPTLAEEMGV LQERITSTKT GSITSVQAVY
VPADDLTDPS PATTFAHLDA TVVLSRQIAS LGIYPAVDPL DSTSRQLDPL VVGQEHYDVA
NGVQTVLQRY KELKDIIAIL GMDELSDDDK MTVSRARKIE RFLSQPFHVA EVFTGSPGKY
VSLKDTIRGF KGILSGEFDH IPEQAFYMVG SIDEAVEKAN KKK
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