Gene SO_4717 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4717 
Symbol 
ID1172296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp4920395 
End bp4922524 
Gene Length2130 bp 
Protein Length709 aa 
Translation table11 
GC content47% 
IMG OID637346421 
Productsensor histidine kinase 
Protein accessionNP_720233 
Protein GI24376189 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCTTTTT TTACTCACTT TTTTGGGGTT AGTTGGCAGC AAATGCAGGC TAAAGTGCGT 
TATCGCATTC TGATCCTGAC TTTATTGCCG ATTTTGCTCA CCTTAGTGAG TTTAGTGTTT
ATCACGATTT ACTGGAATAT CAGTTATACA GGTAAGCAAC TGTTTATGAA GGTAAAAGCT
GATTTGGCTG TCGCTGAGAA CACTCTGCAG CAGGTGCAAG TTCGGCAGGA AAAACAGCTA
GAAAGGGTGA TGACTTCATG GACATTCCAG AATGATTTTA GACCCATCCT CAGTGGCGCC
TTAGCCCATA GGGCGAGCAT AGATACCTTT CTGCATGAGC AAAAAAAGCA GCTCGATTTA
GACTTTTTAC GGCTGGTCAG TGTCGCTGAA GCGGCAGCAG ATCCTGATTT ACGACAGATT
TTACCAAAAA TTGGTGGAAT GTTGCCCTAT TCTGGACTGA TGGTGCTATC CCGTGAGCGC
TTAGCTCGGA TTGACCCAGA TTTAGCGCAA AGGGCTAGTA TTCCCTTGCT GGCGACTTTG
CGGGCGCAAA GTCCGGATAA ACAAGTTGAA GAGCGGGGTT TACTCAGTCG TAGCTTGCTG
CCAATCCCAG ATTCTGAAGG TAAAGTGGCA TGGTATCTCG ACGGTGGAGT GTTGTTTAAT
CGAGATACTC GCATCGTCGA CCATATCCGC GATCTCGTCT ACGACAAGGG CACCTTGCCC
GAACGCTCAA TTGGTACTGT GACGATTTTC CTCGATAACA TTCGGGTATC GACCAACGTC
CCTTTACACT TTTTTCCACA GCCGAATGAG TCCCAAGGAC GCGCACTGGG TAGTTTGGTC
TCGGAGGAGG TGCGGGAAAA AGTGTTAAAT CACGGGGAGT TATGGGTTGA CAGGGCGTTT
GTGTACAACG ACTGGTTTAT TTCTGCCTAT GCGCCGTTAG AAGATATCCG TGGACAGCGA
GTTGGGATGA TCTATACCGG TTTTTCCGAG TCGCCATTTA TTCATAACTA CCTACTTAAT
ATCATTGAGT TAGGCACCAT TCTAATGTTA GTGCTGCTTA TTTCTGGTTT GCTGGTTTAC
CGCGGCGCCT ACAGTCTATT GCAGCCGATT GAGCGTATTC ACCATGTGGT GCAAGCCGTG
CAGTCTGGGC GCAATGTGCG AATTGGTGCC TTGGGGCTAG ATAGGGATAA CGAGCTATCG
AACCTCGCTG AGCAGTTCGA CCGCATGCTG GATTTATTGC AGCGGCGTAA TGCGCAGATC
CAAGCCGCCG CCGAACAGCT AGAAATGAAG GTCGAAGAGC GGACTCGTAG CCTGCAAGAT
AAGACGTTAG AACTACAGCG CAACGTCGCC TTACTCAATG AGACACGCCA GCAGTTGGTG
ACCAACGAAA AGTTGACCGC TCTAGGTGAG TTAACCGCCG GTATTGCCCA CGAAATCAAT
AATCCGACCG CTGTTATCCT CGGCAACATG GAGTTACTGC GCTATGAGCT GGGTGATAAA
GCCGAAGTCG TAAAAGAAGA AATTGATCTA GTTATTCAAC AGGTTGGACG TATTAGCACC
ATTATTCGAA GCTTACTGCA ATATAGCCGT CCGGGTGAGT TCAATGCTCC GTTAGAGATG
CATCCCATTA CGCCTATTAT CGAGGAAATG CTGGTATTAG TGCGACATTC GATTCAAAAA
CAAGAAGTTG TGCTGATAAC TGAATTGAAT GCCAGTTGCC CTGTGCAGGT CAATCGCCCG
CAGTTACTGC AAGTGTTGAT TAACCTTGTG GTGAATGCTG CCCATGCGAT GGATGGCAAG
GGACGAATTT GGGTTCGCAC CTATGATTGG GTGCAGCAGG ATATAGCGAT TGGTGTCAAA
ATCGAGGTTG AAGACGAAGG TTCAGGGATT GAGCCTGAGC AATTAGGGCG GATTTTTGAT
CCTTTCTATA CCACTCGTAA AGATGGTACT GGCCTTGGAT TATCACTCAG TTATGGCATT
ATCAAGCGTA TTGGTGGCAC GATTGAGGTG AGTTCGGTGT TGGGTAAAGG CTCAATCTTT
ACGATTGGTT TGTACCATGA GGCGAAGGAA GACCATCAAA ACAATCCCTA CGACGGCTTA
CATTTTTCGG GAAATCACCC TGAAAGTTAA
 
Protein sequence
MSFFTHFFGV SWQQMQAKVR YRILILTLLP ILLTLVSLVF ITIYWNISYT GKQLFMKVKA 
DLAVAENTLQ QVQVRQEKQL ERVMTSWTFQ NDFRPILSGA LAHRASIDTF LHEQKKQLDL
DFLRLVSVAE AAADPDLRQI LPKIGGMLPY SGLMVLSRER LARIDPDLAQ RASIPLLATL
RAQSPDKQVE ERGLLSRSLL PIPDSEGKVA WYLDGGVLFN RDTRIVDHIR DLVYDKGTLP
ERSIGTVTIF LDNIRVSTNV PLHFFPQPNE SQGRALGSLV SEEVREKVLN HGELWVDRAF
VYNDWFISAY APLEDIRGQR VGMIYTGFSE SPFIHNYLLN IIELGTILML VLLISGLLVY
RGAYSLLQPI ERIHHVVQAV QSGRNVRIGA LGLDRDNELS NLAEQFDRML DLLQRRNAQI
QAAAEQLEMK VEERTRSLQD KTLELQRNVA LLNETRQQLV TNEKLTALGE LTAGIAHEIN
NPTAVILGNM ELLRYELGDK AEVVKEEIDL VIQQVGRIST IIRSLLQYSR PGEFNAPLEM
HPITPIIEEM LVLVRHSIQK QEVVLITELN ASCPVQVNRP QLLQVLINLV VNAAHAMDGK
GRIWVRTYDW VQQDIAIGVK IEVEDEGSGI EPEQLGRIFD PFYTTRKDGT GLGLSLSYGI
IKRIGGTIEV SSVLGKGSIF TIGLYHEAKE DHQNNPYDGL HFSGNHPES