| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4705 |
|---|
| Symbol | |
|---|
| ID | 1172284 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 4907149 |
|---|
| End bp | 4908660 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637346409 |
|---|
| Product | transcriptional regulator, putative |
|---|
| Protein accession | NP_720221 |
|---|
| Protein GI | 24376177 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1396] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAGT CACATTTCCT TGGCACCAAA ATACGTAACC TACGGAAACG TAATAATTTA
ACCATGGAAG ATTTATCGGC ACGCTGTATC CGCGTCGATG CGAGTAGTGC GCCATCGGTG
TCATATTTAT CGATGATCGA GCGTGGTAAG CGCGTGCCCA GTGCCGAAAT GCTGGCCGTG
ATTGCGACAG TGTTTCAAAA GGACGTTGAC TGGTTTTTAG ACGATGTGCC CGAAGAGAGT
GCCATCACGC CAGACAAAGG CCGCCGTGGT GGGATTAGCG GTATGGCACT CGAACCCAGC
TTTTTGTTTT CAAATGATAT TTTGCAAATT GCTATACCAG AAATGTTGTC GCAGACCGGG
ATCTCGGGTC GGCAATTTGC CCATTTGTTA ATCCGCGCCC ATCAAGAACA CCATCAAAAC
CATTTCCCCG ATCTTGAACG TGCCGCCGAA GAGGTAGGGT TGAAGCGTAT GCCCTTATCC
CTCGATGAAA TGCTGGATAT TGCTAAGGGA GTAGGTTTAA AAATCAAGTG GATAGATAGC
ACTCCACAGG AAGTGATTGA TGAGCGTGGT GTCAGTTCGC ATCAGTTAGT CACGTCTTTT
TTTGAGCCAC CCAGCACGAT TTATATCAAT AAAATGCTTA AAAACCGCCC CAGTCGGCTT
AAGTACGATC TCGCCGCCCA TATCGGCCAT TGCGTGTTAC ACAATAAGGA TGGGCTTAAG
AGTGTGATGA TCTCCGGCCG TAAATTGCAG ATGGATGAAG AAGTGACAAT GCAATCTAAT
ACCCTGAATG CACAGGATAT TTTGCATGCT TGGCGCGACT TCGAATCCAG CTTTTTTGCC
GGAGCCCTGT TATGCCCTAA AGTGCCCTAT CGACAATTAC TCGACCGTCA CGGTTACGAA
ATTGAGGTGC ATAAACAGCT ACAAGTGTCG GCTTCGGTTG CTATGCGGCG GATGACCGTG
GTATCGCCTT ATCCCCATTG GCATTATTTT GATGCCTACG CGCCGGGCAA ACTTAAAGCC
GTTTACCGCG GCAACGGTAT TCCCCTGCCT TGGGGCAATA TGCGGCTGGT GGAAGACCCC
TGCCAACACT GGGCGGTGTT TAGAATGATC AGTGAGCCTT CAGTTGGGAC ATCAGCGCAG
ATTTCGATTT TAAATGTGGG GAATGAACCG CGAATTTATT GCTGCGAATC GATTAAGGTC
GAAGATTCGG CGGGCAACCC CCATGTGCTC TGCGCTGGCA TTGATCTCAA TCCGGCCATT
GAAGCTCAAG GTAAAGATGC CCTCTCTATC GCCCATGATT TAAAGGCCGC CTGTGTTACT
GGCGGCGGCT CAGTGGCGAT TCCTAAGCAT ATAAAAAGTG ACTTAGTCAG CATTGCTAAG
ATATTGAATA TCAACTGGAT TGAGCGCGGA ATTAAAAACG ATGCCCGCTT GATTTGCTCC
CGCGGCGCCG TCTGCCCACG GCAACCCAGC TGTTATCAAG CGGGTAAATC CCAGTGTGAT
GGGGCTGAGT AA
|
|---|
| Protein sequence | MRKSHFLGTK IRNLRKRNNL TMEDLSARCI RVDASSAPSV SYLSMIERGK RVPSAEMLAV
IATVFQKDVD WFLDDVPEES AITPDKGRRG GISGMALEPS FLFSNDILQI AIPEMLSQTG
ISGRQFAHLL IRAHQEHHQN HFPDLERAAE EVGLKRMPLS LDEMLDIAKG VGLKIKWIDS
TPQEVIDERG VSSHQLVTSF FEPPSTIYIN KMLKNRPSRL KYDLAAHIGH CVLHNKDGLK
SVMISGRKLQ MDEEVTMQSN TLNAQDILHA WRDFESSFFA GALLCPKVPY RQLLDRHGYE
IEVHKQLQVS ASVAMRRMTV VSPYPHWHYF DAYAPGKLKA VYRGNGIPLP WGNMRLVEDP
CQHWAVFRMI SEPSVGTSAQ ISILNVGNEP RIYCCESIKV EDSAGNPHVL CAGIDLNPAI
EAQGKDALSI AHDLKAACVT GGGSVAIPKH IKSDLVSIAK ILNINWIERG IKNDARLICS
RGAVCPRQPS CYQAGKSQCD GAE
|
|---|
| |