| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4573 |
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| Symbol | menD |
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| ID | 1172158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 4766990 |
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| End bp | 4768711 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637346284 |
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| Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
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| Protein accession | NP_720089 |
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| Protein GI | 24376046 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
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| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAACCG AAAACACTGC CACACTCAAT CTCATGTGGG GCGCACTTAT TCTGGAAGAA
TTAGCACGTC TTGGTGTGCA GCATGTCTGC ATGGCACCAG GCTCACGCTC AACCCCGTTA
ACTCTCGCTG CGGCAAAGCA AACCAAGCTG AAACGTCATT TGCATTTCGA TGAGCGCGGC
TTAGGTTTTA TGGCGCTTGG ATTAGCGAAA GCCAGCTCTG CGCCCGTAGC CATTATTACC
ACCTCTGGCA CGGCCGTCGC TAACCTATAT CCTGCAATAG TCGAAGCCTG GCTCACCCAT
GTACCTTTAA TTGTCCTCAG TGGTGACAGA CCGCCAGAAT TACTCGGCTG CGGCGCCAAT
CAAGCGATTG TTCAACCGGC AATTTTTGCC AATTACGCTC AGCAGGTAAA CCTGCCGACG
CCCGATGCAC ACATCGCGCC GCAGATGTTA CTCACCACGC TTGATGAAGC CGTGGCCAAT
CAAACACGCC CAGTTCATAT CAACTGTATG TACCGCGAGC CGCTGTATCC GAGTGAATTA
ACTGCCACAA TTCTCGATAG TGAATCGCCG TACCTCAAGC CGCTACAAAC GTGGCTGCAA
CAGGCACGCC CTTACACTAT CTATGGCAAG CGTGAACAAT TAAGCCACCC GAGCGAAGAT
GCCATTATGC GCTTCGTCCA CGGTAAAGGG GTGATCATCG CGGGCACGCT AACACCCGAG
CAAGATCCAC AGCAACTCAT CGCGCTATCG CAAAAAATTG GCTGGCCACT ACTGACCGAT
GCTCAGTCCC AACTGCGACA ACACCCTGCG GCGATTGGCA ATATCGATCA ATTGCTACAA
CATCCCAAGG CACGCAATCT ATTACAGGAA GCCGATCGCG TACTGGTATT TGGTGGACGA
TTACTGTCGA AGCGTTTAAT TGCTTATCTT GCCGAGCAAA ACTGGCACAG TTACTGGCAA
GTGCTGCCGC AGCAAGATAG GCTCGACCCA AGCCATAATG CGAAACACAT CTGGCACGCC
AATGCCGCCC AATTTGCTCA ACTTAATTGG TATCGCTCCT CTTCGGCCAA TTGGGCGAAT
ACCCTAATCA CCTATAACGA TGACTTGCAT CACTTATTTG TGCGCAATAT CGATCAGGGT
GAATTTGGGG AAGCTCAGGT TATCCGCGCG ATAGCCAATA CGCGGCCACT CGAGCAGCAA
CTGTTTATTG GCAATAGTCT ACCAGTGCGT TTATACGATA TGTACGCGCC GGTGAGCTGT
TGCACAGCAA CCACTTATAC TAACCGCGGC GCATCGGGAA TCGATGGCTT ACTGGCCACC
GCCTGCGGTA TTGCTGCCCA CCAAGGTAAA CCGACCAGCT TGATTATTGG GGATTTATCC
CAGTTGCATG ATCTCAATTC CTTTGCCATC GCCCGCAGTT TAACCAGTCC TCTGGTGATT
ATTATCCTCA ACAACGATGG CGGTAATATC TTTAATCTTT TGCCCGTCCC CAATGAGGAG
CTGCGCAGCG ACTACTATCG TTTAAGCCAT GGTTTAGAGT TTGGTTATGC CGCCGCTATG
TTTAATCTTC CCTATAATCA AGTGGATAAC TTAGCCGATT TTCAAACCTG TTATAACGAA
GCGCTGGATT TTCAGGGTGC TTCTGTCATC GAAGTCACCG TTAGCCAACA CCAAGCCAGC
GAGCAGATCG CCGCGCTCAA TCTATGGGTA AAACAAAGCT AA
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| Protein sequence | MRTENTATLN LMWGALILEE LARLGVQHVC MAPGSRSTPL TLAAAKQTKL KRHLHFDERG
LGFMALGLAK ASSAPVAIIT TSGTAVANLY PAIVEAWLTH VPLIVLSGDR PPELLGCGAN
QAIVQPAIFA NYAQQVNLPT PDAHIAPQML LTTLDEAVAN QTRPVHINCM YREPLYPSEL
TATILDSESP YLKPLQTWLQ QARPYTIYGK REQLSHPSED AIMRFVHGKG VIIAGTLTPE
QDPQQLIALS QKIGWPLLTD AQSQLRQHPA AIGNIDQLLQ HPKARNLLQE ADRVLVFGGR
LLSKRLIAYL AEQNWHSYWQ VLPQQDRLDP SHNAKHIWHA NAAQFAQLNW YRSSSANWAN
TLITYNDDLH HLFVRNIDQG EFGEAQVIRA IANTRPLEQQ LFIGNSLPVR LYDMYAPVSC
CTATTYTNRG ASGIDGLLAT ACGIAAHQGK PTSLIIGDLS QLHDLNSFAI ARSLTSPLVI
IILNNDGGNI FNLLPVPNEE LRSDYYRLSH GLEFGYAAAM FNLPYNQVDN LADFQTCYNE
ALDFQGASVI EVTVSQHQAS EQIAALNLWV KQS
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