| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4552 |
|---|
| Symbol | |
|---|
| ID | 1172139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 4747944 |
|---|
| End bp | 4750061 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637346265 |
|---|
| Product | sensory box protein |
|---|
| Protein accession | NP_720069 |
|---|
| Protein GI | 24376026 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGAT GGCAGCACTT GCTAAATAAA CTCACAACAG ATGACCCACT GTTGCAAGAA
AAGCTCTCTG TTTGGCGAAT CCATCCCCAT AAAACACCCC TCGCGCTGAT CCAAGGTTTT
AGTTTTATCA GTGCAAACAG TGCCACCCTC GACTACTTTG GCACCGAATA TGATACGTTT
GTCAATGCAA CTCCCTATGA CTTTTCGCCT AGAATTCAAT CATCTGGGCG TAACAGCGTT
GAATTTGCGC GGGAGATGAT TCTAGAAGCC GTTTCAGGGA TTAATGTCGA ATTCAGTTGG
CTCCACCTTA ATCAACAAGG GAACGAACTG CCTACTCGGG TGAACCTCTA TCGCTGCTAT
CTACAGCAAC AGCCTGTTGT ACTGGTCGAG TTACAAGCGT TAAACCGTAG AACCCAAGTC
AGGCCAGCCA TTGCCGACGG CTTTGCCCAT ATTCCGAAAG AAATCCTCTC GACGACCTTA
GAAGAAAGTG CCGAAGCGGT TTATATCACT GATATCGATA ATAAAATTTT GGCGGTCAAC
AAGGCGATGT GCCGTATTTG CGGTTATAGC GCAGAGCAAT TAATCAATAA AACCCCATTT
TTTTTAGAAG CCAGCCCACT CAATGCCAGT GACGAAAGCG AGTGCCTGCA AGCTTTAAAA
CAGCGTGGCT TTTGGCAGGG CGAAACCTTA AAACAACGTT CTGATGGCAG CACATTTCCA
GCATGGCAAA GTAGTCGCCG CATCGCTGCA GATGGTCTTG AGTATCATGT AAATATCTTT
AGTGATATCA GCACTAAAAA ACTGCTCGAA ACACAACTCA CTACTCGTGC CATGTATGAC
ACCTTAACGG GGTTACCAAA TCGTTTCCAT CTTAAACAGA TCCTTAATGG CGCCCTCGAC
AAACTAAAGG ACGATCCCCT CGCCCTCGGT GCACTGATGT TTTTGGACCT CAACGGTTTT
AAAAATATCA ATGACAGTTT TGGCCATTCC ATGGGCGATA GAGTATTGCA ACTGGTCGCA
GCACGCTTAG AAGCCGGTTG CATCGAAAAA GCGGATATTG CCCGCATGGG CGGCGACGAA
TTTACCCTAG TGCTGCAGGA TTGTAGTTGC AAGGAAGAAA TCCAACTGTT TGCCGAGCAA
ATTTTAAGCT TGTTCGACAG CCCGTTTGAA ATTGAAGGCC AAAAGTTTTT CCTCGGCACT
AGCATTGGCA TCGCGCTTTT TCCAACACAC AGTGATCAAG CTGGCCAACT GATTAGCTTG
GCCGACACAG CCATGTATTG CGCGAAAAAA AACCAGCCTC ATTTAGTGTT TTATGATAAA
TCCATGAGCC AAGCTGCCGA GCTTAAATTA AAACTTATCA ATAACCTAAG ACATGCCCAC
AGTTTAAAGC AGTTCAAACT TGCCTATCAG GCCATAGTCG ATTTGCATAC CAATAAACCG
ATTGCTGCCG AGGCCCTGCT ACGTTGGCAA AAATCCCCCA CAGAGCATTA TGAAGCCGCT
GAGTTTGTGC CTTTGCTGGA GGAAACGGGC CTGATTGTCA GCATTGGGCA ATGGGCACTC
GAACAAGCCT GTAAGCAGGC ATCAGTATGG CGAGCACAAT ATCAGCCCGA TTTTAAGATT
TCAGTTAACG TATCGCCATT GCAATTGGAG CATGTGGACT TTGTAGGTCA AGTGGTTAAC
GCGCTTGAAA TGGTTGCCCT ACCCGCTGAA GCCTTAATTT TAGAAATCAC TGAATCCGCG
CTGCTGCGTC AACCTGAACA GGCTCGTCAT ACACTTGAAC GAATTAAAGC CTTAGGTGTT
GGCATTGCTA TTGATGACTT TGGCACAGGG CTGTCTTCGC TCAGCCGTTT AGGAACCTTA
CCCATTGATA GCGTGAAGAT TGATGCTGAA TTTGCCCTCA GATTGACGGA TGCCTCAGGA
CAAAAACTCT GCCATGCCAT AGTGCAATTA GCACAGGCAC TCGGCATTCA CTTTGTAGCG
GAAGGCATCG AGACCCAGCA GCAAAAAGAT ATTATTACCC ATATGGGACA AGGCTTTGCC
CAAGGCTTTT TATTTGGTTA TCCAAGTTAT GTTGAGCAGT TTACTGAGTC CTATTTGGCC
GAGAAATGTA TTGCTTAA
|
|---|
| Protein sequence | MIRWQHLLNK LTTDDPLLQE KLSVWRIHPH KTPLALIQGF SFISANSATL DYFGTEYDTF
VNATPYDFSP RIQSSGRNSV EFAREMILEA VSGINVEFSW LHLNQQGNEL PTRVNLYRCY
LQQQPVVLVE LQALNRRTQV RPAIADGFAH IPKEILSTTL EESAEAVYIT DIDNKILAVN
KAMCRICGYS AEQLINKTPF FLEASPLNAS DESECLQALK QRGFWQGETL KQRSDGSTFP
AWQSSRRIAA DGLEYHVNIF SDISTKKLLE TQLTTRAMYD TLTGLPNRFH LKQILNGALD
KLKDDPLALG ALMFLDLNGF KNINDSFGHS MGDRVLQLVA ARLEAGCIEK ADIARMGGDE
FTLVLQDCSC KEEIQLFAEQ ILSLFDSPFE IEGQKFFLGT SIGIALFPTH SDQAGQLISL
ADTAMYCAKK NQPHLVFYDK SMSQAAELKL KLINNLRHAH SLKQFKLAYQ AIVDLHTNKP
IAAEALLRWQ KSPTEHYEAA EFVPLLEETG LIVSIGQWAL EQACKQASVW RAQYQPDFKI
SVNVSPLQLE HVDFVGQVVN ALEMVALPAE ALILEITESA LLRQPEQARH TLERIKALGV
GIAIDDFGTG LSSLSRLGTL PIDSVKIDAE FALRLTDASG QKLCHAIVQL AQALGIHFVA
EGIETQQQKD IITHMGQGFA QGFLFGYPSY VEQFTESYLA EKCIA
|
|---|
| |