| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4539 |
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| Symbol | |
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| ID | 1172128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4734044 |
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| End bp | 4738948 |
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| Gene Length | 4905 bp |
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| Protein Length | 1634 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637346254 |
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| Product | serine protease |
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| Protein accession | NP_720056 |
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| Protein GI | 24376013 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTGA AGAAGATCAG CATAATGACC TTTGCGGCGC TATACGCGAC CGGAATAGGG
ACATTAGTTG CCAATCCTTT AGATAGGAAC CAAGCTGAGC AGAAACTCAT TGGTATCAAG
CTGGCACCAG AACAAATATT AGCCAATAAA AATAAACCTA CTCATCCGGC TCTGAATCGC
GCTGACAGAC CTGGCCAAAT TGGTATGAAC GTCCATCGCG CTGTAAATGG TAGTAGCCAT
AAGGCGCCAT TTGCTTGGGA AAAGGACATT GATGGAACGC ATACCTATAT TATTCAATTA
ATGGATGCCC CGGTTTCACT TTATCAGGGT GATAGACCTG AGTTTGCCGC AACGTCACCC
CGTAGCAATC AGCCTGCAAT ACGTTCCAAT GAGCGTTTTG GGACTATCGA TTTAAAGAGC
AATACAGTTA AAAACTACCA AGCTTTTTTA ACGCGTTCTC AGGATGACAC GGCTAGCCAA
ATCAAGCGTG TTGCGCCAGA TGCTGAAATA AAACGTCGCT TTAATGTGGC ACTAAACGGC
ATGACCATGG TGTTAACTCA AGAACAAGCC GCTGAAGTAG CTAAGTTGCC CAATGTTAAA
GTGGTGACTC GGGCGAAGGA ATACCAATTA TTCACCGATG TCGGTCCTAA GCATATTGGC
GCTGATATGA TTTGGCAGGG CACGAGCACT CCCGATGGCG TTGCTATGCG CGGTGAGGGC
ATCATTGCCG GTATTATCGA TACTGGGATT AACTCAGATC ACCCCTCTTT TGCCGCAGTC
TCGGCAGACG GTTATAAGCA CGTAAACCCA TTAGGCGAAG GAAAATATCT GGGCGACTGC
CAAGAATATC CTTTGATGTG TAACAGCAAG CTTATCGGTG TTCGTTCTTA CGATATCATT
ACCGATACCT ATAAAGATCC GATTTTCCAA CCCGATCTGC CGCCATGGGA AGTTGATTAT
AAACGCCCTC CAAACGGTGA AGATTACAAC GGCCATGGTT CGCACACTGC CAGTACAGTT
GCGGGTAACG TGCTCTACAA TGTGCCCTTT AAGCTCAATG GAACTGATGA AAAATCAGAT
GGTTTTGATA CTTCTTTAGT CTTCCCTGAA ATTTCAGGCG TTGCCCCGAG GGCCAACATT
ATTGCCTATC AAGTGTGCTA TCCCGGTGGT GGGTCTTATG GCGAAACCTT CGGTGGTTGT
CCTGGCGATG CATTGGTAGC CGCGATTGAA GATGCCATTA TCGACGGCGT TGATGTGATT
AACTTCTCCA TCGGTGGGCT TGAAAATCTG CCTTGGTACG ATGCCGTTGA AATGGCGTTT
TTAGCTGCGC GTGAATCAGG GATCTCTGTT GCTGCCTCGG CGGGTAACTG GGGACGTTAT
GGCCCAGGTT ATATCGACCA TGTATCACCT TGGTTAACAT CCGTTGCCGC CAGTACCCAT
GGACGCCAAA TTGAACCTGT TGAAGGCAAA CTGTCTTTTG TGGGTGAAAA TGCTCCCGAA
GATATGACTG GCTATGCCGT AACAGGTGAT ATTACGGGTA ATTTAGTTGA TGCTGCCGCT
CACAATGACC CTCTCTGTTT ACAACCCTTC CCCGCGGGCA CTTTTAAAAG TGACGATGTT
GTCATCTGTA AGCGTGGAGA AAATGGCCGA GTACAAAAAG GGATTAACGT TGCAGCAGGT
GGCGCGGGCG GGATTATCCT GTATAACGCC GTTTCGTTTG ATGATGGGAC TGGCGCGAAC
AGCCTCAGCT TAAACCCTTT CCCGATCCCT GGAATGCATA TTGATGCTGC ATCAGGTAAT
CAGCTAGTGA AGTGGGTCGC CAACGCTACA GCACCAACAG TAACCATTAC TGCAGGTAAA
ATTATCACCA CAGAGCGTGA AGCCGATGTG TTAGCCGACT TTTCCTCCCG TGGCCCTAGC
CATACAAACC CCAATGTGAT GGTGCCTAAC GTGTCCGCCC CTGGGGTGGA TGTGTTTGCT
GCCTACTCAG ATGAAATGCC CTTCAATCTG TATCCATCGC CCAGCGATTA TGTGGCAATC
AGCGGTACCT CGATGTCAGG CCCCCATGTT GCAGGTGCAT TAGCACTGCT CACTCAGGCG
CACCCACAGT GGACGCCTGC GATGATCCAG TCAGCCCTGA TGACCACAGC CGTGTTAGGT
AAAGCACCAA CATACGAGAA TCCACCAAAA TTAGTGGATG CGACTTTCTA CGATATGGGT
AGCGGGGTGA TTAACGTTGC CAGAGCCGTA AAAGCGGGTC TGGTGATGGA TGAAAACGGT
GATAATTACC GCGCCGCCAA CCCGATGGAA GGTGGCGATG TGACCGCGTT AAACGTGCCT
TACCTGGTTA ATGCTGAATG TAAAAGTAGC TGCACTTGGA TGCGTACCTT TACTGCCACG
ACTGACGGTG AGTGGAACGT GAGGGCGACC GAAATCACCA CAGAAGGCGC GCCTTTCCTT
GAGCTAAGTG TTTATCCGCA AACGATTAAG TTAAAAGCGG GTGAGCAACA AAGTATTATG
GTGACGGCGA AAATCCTCGA TGTGACCTCA GTCAACGCTA ACTCTTCCTC AAACGAAGTG
TTTGGTAAAA TTGACCTGAA ACCAACGGAT GCCAGTTTGC CAGCTCAATA CTTGCCTGTT
ATGGCGCGCT TTACAGGCTC TAGCTTGCCA GAAATTGTCA CGGGTAAAAT CCATCGCGAT
ACTGGCACCA TGCTGACACC TGAGTTGATG ACCAAAGAAA TCAGCGAGCT TAATGTCAAA
GTGAGCGGCT TAACGGCTGG TAAAGTAACT GAGCACAAGC TTAGCGCTGC CTATGTGAAG
TTCCGCGATC CAGAAACCTT GGTCAATAAC CCAGGTATTG TATTGCAGTT CTTTGATGTG
CCAGAAGGTA CTCGCCGCAT TGTGTGGGAA GAGGTATCAG CTGATAAATC AGCATCGACG
TCGTTAGATA TTGGTATGGA TCTCAATAAT AACGGCAAAG TGGAATGGTA TGACGAGGCG
ATTTGTTACT CTTATACCGA TGTTACCGAC TATTGCGCGA TTAATGATCC AACGCCTGGT
CGTTATTGGG TGATGTTAGG CAACTTTAAG CGCCCATGGG GAGATGAAAT TGATACCAAA
GACAACATTA AAGCGAGTCT GGCGATCATT TCCGACACTG ATACTAAGCA ACTTAATGTG
ACTGGGCTTG CCAGTACCAA TGGTATCGAT CCTTACCAAT TACAAATGAA CTGGTCTGCC
ACTGGCAGTA AAGCGGGTGA TCGCTTATAC GGTTTGGTTG AAGTCGGTAA TGGCGCGCAA
AACGTAGGTA GCATTGGCAA AATGGCCGTG CATTTAGTGC ATGAGGGCGA TGATGTCAGT
ATCACGACCA GCCAACAACA GGCCAAAGAA GGCGATGTTG TTGAGGTTAA GATGGTGATG
GCACCAAACC TACTCGGATT AGAGCGCGAT GTGAATATTG CCTTAACGCT GCCCGAAGGT
TTGCAATTAT TGCCTGACAC GCTAAAAGCG AACAGCAATA ACCAAGATCT TAAAGCTGGC
CTGACTGTTG CTGCACAGCA AATCACCCTG AAAGCGATGC AACAGGCGAG TAATGCGCAA
AAACGTCAAT ACACCTTTAC CACCAGTGAG ACCGACGAGA GCTGTCGAAT TCCTATCGGT
TCGAATCCTT ATTATTTGGA TTTATTTACC GAGGCAGGAA TTGAGTCTGA AACAGCGATT
GCTGGTCGGG TGAATGATAC AGTAACTGTG CCATTAAGTA CGTTTGGTAT TGATCGTATC
CCGCTGTATA ACAACCCAGA AGAATACTCA CACAAAGATA CCTTAAGTAT TTCTCCTGGT
GGCTTTATTC AGCTCGATCA ACTACCACTG TTCTGGGCTG CTCACTACCC AATGGAAGAG
CAATATTTCC CTGATACAGT GATTGCTCCG TTATGGCGTG GAGATGGTAT TACCATCCCA
GAATATAATA TGGATAGCGA AAGCTTTGAC GGTGTATCCC TTGCCGTGAC GAACGACCGC
CGCTACCTGA TTGTTGAATG GGACAATATG CGTCAGGAGT TTGCCTTTGG TGTTAACCAT
GATCCTGACT ACGATGCTCG CTACAGCTTT GAGCTATTAG CTTCGACGCA GCTTAATTTT
GCCCCAGGTG AACATGAGTT TATTTTTGCC TATGACAAAT TAACGGGTAA CAAAGCGCAT
TTAGGTTCAA TTGGTTTACA TGGTTACCAT GGACCACGTG GCACCTTCGG CCCAGCGTAT
GGTTATATTG GCGATGGTTT TGCCTTTAAC GATCTGGATA AGAAAATTGC AGAAGGCTTA
GTGGTCTGTG CTAACTACAC TGGACCTGAA GCGACGGCAA TTGAACTATC ATTCTCGGCC
CGTGTTGGTG CTAAAGCTGT AGGTCAAGAT CTGCAGATTA TTGCTAAAAG TGATTACACC
GGCAGCAATA GTATGACCTC TAGCGGAAGC TTCAAAGTAC CTTCAAACCT TGCGATAGGT
GCCCTTGGCA ATATGTCCGT TGCTGAAAAC ACCAGCATCA GTTTTGAGGT GCTAGTGCAA
GATAAAGAAA ATACCGCTAA TGGTATCCAA GTGACAGGCG CGCACATCAC GTCAGTCGTT
AATGGCAACA AAGTCACCAT CACACCCGAA AAAGATTGGC ACGGTACAAC CACTGTCACA
GTGAAAGCCT TTGATAAGGT TTATCAAAAT GACATGGTGC AAACGAGCTT CAACTTAGTC
GTGAACTCTG ATGGTGTGGA GCCAACGCCG CCGACTCCAC CTACGCCTCC AACGCCTCCT
GTGGAAGAGA CTAAAGATAG CAGTGGCGGT AGCTTGGGCT GGCTTGCTGT CCTGATGCTT
GGATTGATGG CAGTATCACG TCAAAAATGG AATGTTAATA AGTAA
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| Protein sequence | MKLKKISIMT FAALYATGIG TLVANPLDRN QAEQKLIGIK LAPEQILANK NKPTHPALNR
ADRPGQIGMN VHRAVNGSSH KAPFAWEKDI DGTHTYIIQL MDAPVSLYQG DRPEFAATSP
RSNQPAIRSN ERFGTIDLKS NTVKNYQAFL TRSQDDTASQ IKRVAPDAEI KRRFNVALNG
MTMVLTQEQA AEVAKLPNVK VVTRAKEYQL FTDVGPKHIG ADMIWQGTST PDGVAMRGEG
IIAGIIDTGI NSDHPSFAAV SADGYKHVNP LGEGKYLGDC QEYPLMCNSK LIGVRSYDII
TDTYKDPIFQ PDLPPWEVDY KRPPNGEDYN GHGSHTASTV AGNVLYNVPF KLNGTDEKSD
GFDTSLVFPE ISGVAPRANI IAYQVCYPGG GSYGETFGGC PGDALVAAIE DAIIDGVDVI
NFSIGGLENL PWYDAVEMAF LAARESGISV AASAGNWGRY GPGYIDHVSP WLTSVAASTH
GRQIEPVEGK LSFVGENAPE DMTGYAVTGD ITGNLVDAAA HNDPLCLQPF PAGTFKSDDV
VICKRGENGR VQKGINVAAG GAGGIILYNA VSFDDGTGAN SLSLNPFPIP GMHIDAASGN
QLVKWVANAT APTVTITAGK IITTEREADV LADFSSRGPS HTNPNVMVPN VSAPGVDVFA
AYSDEMPFNL YPSPSDYVAI SGTSMSGPHV AGALALLTQA HPQWTPAMIQ SALMTTAVLG
KAPTYENPPK LVDATFYDMG SGVINVARAV KAGLVMDENG DNYRAANPME GGDVTALNVP
YLVNAECKSS CTWMRTFTAT TDGEWNVRAT EITTEGAPFL ELSVYPQTIK LKAGEQQSIM
VTAKILDVTS VNANSSSNEV FGKIDLKPTD ASLPAQYLPV MARFTGSSLP EIVTGKIHRD
TGTMLTPELM TKEISELNVK VSGLTAGKVT EHKLSAAYVK FRDPETLVNN PGIVLQFFDV
PEGTRRIVWE EVSADKSAST SLDIGMDLNN NGKVEWYDEA ICYSYTDVTD YCAINDPTPG
RYWVMLGNFK RPWGDEIDTK DNIKASLAII SDTDTKQLNV TGLASTNGID PYQLQMNWSA
TGSKAGDRLY GLVEVGNGAQ NVGSIGKMAV HLVHEGDDVS ITTSQQQAKE GDVVEVKMVM
APNLLGLERD VNIALTLPEG LQLLPDTLKA NSNNQDLKAG LTVAAQQITL KAMQQASNAQ
KRQYTFTTSE TDESCRIPIG SNPYYLDLFT EAGIESETAI AGRVNDTVTV PLSTFGIDRI
PLYNNPEEYS HKDTLSISPG GFIQLDQLPL FWAAHYPMEE QYFPDTVIAP LWRGDGITIP
EYNMDSESFD GVSLAVTNDR RYLIVEWDNM RQEFAFGVNH DPDYDARYSF ELLASTQLNF
APGEHEFIFA YDKLTGNKAH LGSIGLHGYH GPRGTFGPAY GYIGDGFAFN DLDKKIAEGL
VVCANYTGPE ATAIELSFSA RVGAKAVGQD LQIIAKSDYT GSNSMTSSGS FKVPSNLAIG
ALGNMSVAEN TSISFEVLVQ DKENTANGIQ VTGAHITSVV NGNKVTITPE KDWHGTTTVT
VKAFDKVYQN DMVQTSFNLV VNSDGVEPTP PTPPTPPTPP VEETKDSSGG SLGWLAVLML
GLMAVSRQKW NVNK
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