| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4513 |
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| Symbol | |
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| ID | 1172105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 4705625 |
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| End bp | 4708477 |
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| Gene Length | 2853 bp |
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| Protein Length | 950 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637346233 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | NP_720033 |
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| Protein GI | 24375990 |
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| COG category | [C] Energy production and conversion
[R] General function prediction only |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing
[COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTAA CTCGCAAGTC CGATGTCGCC CAAGTGGCCA ACAAACCGAC GTTAGGTATT
AGCCGTCGTC AATTTATGAA GCAAGCAGGT ATTGCTACAG GTGGTATCGC CGCCGCTTCT
TTAATGGGTA CTGGCATGAT GCGCCGCGCA GAAGCCAAAG ATGTGCCATA TGATGCTCCA
ATCGAGATCA AACGTACTAT TTGTAGTGCG TGTGCTGTCG GTTGTGGTCT GTATGCCGAA
GTACAAAACG GTGTGTGGAC AGGTCAAGAG CCTGCATTCG ATCACCCATT CAATGCCGGT
GGCCACTGTG CTAAAGGTGC TGCGCTACGT GAACACGGCC ACGGTGAAAA ACGCCTGAAA
TACCCAATGA AATTGGTTGA TGGCAAGTGG AAAAAAATCT CTTGGGAAGA CGCGATTAAC
GAAGTGGGCG ACCAAATGCT CAACATTCGT AAAGAATCAG GCCCAGACTC TGTGTACTTT
ATGGGTAGTG CGAAGTTCTC TAACGAAGGT TGTTATGCAT ACCGCAAACT GGCGGCCATG
TGGGGCACCA ACAACGTCGA CCACTCTGCT CGTATTTGTC ACTCTACCAC GGTAGCTGGT
GTTGCTAACA CTTGGGGCTA CGGTGCGCAA ACTAACTCTT TCAACGACAT TCAGAATGCC
AATGCCATCT TCCTGATCGG TGCAAACCCT GCGGAAGCGC ATCCAGTTTC TATGCAACAT
ATTCTGATCG CCAAAGAGAA AAACAACGCG AAAATCATCG TCGTTGATCC TCGTTTCTCT
CGTACTGCAG CACACTCAGA TCTGCACTGC GCGATTCGTC CAGGTACCGA TATTCCGTTT
ATTTACGGTA TGTTATGGCA CATTTTCGAA AACGGTTGGG AAGATAAAAC CTTTATCCAA
CACCGCGTAT TCGAGATGGA AACCATCCGT GCAGAAGTGA AAAAATTCCC ACCTAAAGAA
GTGGCGAATA TCACAGGCGT AAGCGAAGAA GTGGTTTATC AAGCCGCGAA ACTGATGGCA
GAAAACCGTC CAGGTACCGT TATTTGGTGT ATGGGTGGTA CTCAGCATCA CGTTGGTAAC
GCTAACACCC GCGCATACTG TATTCTGCAA TTAGCCTTAG GCAACATGGG CGTATCTGGC
GGCGGTACTA ACATTTTCCG TGGTCACGAT AACGTTCAAG CAGCAACGGA CTTAGGTCTG
CTATTTGATA ACTTACCAGG TTACTACGGT CTGACTACTG CGGCATGGGA ACATTGGACT
AACGTGTGGG AACTGGATAT GGAGTGGATG AAGAGTCGCT TCGATCACGG AACCTACCTT
GGTCGTGAGC CAATGACCAC ACCTGGTATG CCATGTTCTC GCTGGTTTGA CGGCGTGTTA
TTAGAAAAAG ATAAACTGGC ACAGAAAGAC AATATCCGCA TGGCTTTCTT CTGGGGACAA
TCGGTTAACA CTGGCACCCG CCAACGTGAT GTCCGCGATG CCTTAGATAA ATTAGATACG
GTTGTGGTCG TGGATCCATT CCCAACCATC GCAGGTATCA TGCACAGCCG TAAAAACGGC
GTGTACCTGT TACCAGCCTG TACTCAATTT GAAGCCTCTG GCGCAGTATC TAACTCAGGC
CGTTCAATTC AGTGGCGTGA GCAGGTGATT CAGCCGCTAT TCGAATCTAA AAACGATATC
GAAATTATGT ACATGCTTGC GAAAAAAGTG GGCATTTCTG AGCAATGGGC TAAGCGCTGG
AACATCGCAG GCAATATGCC AGTGGTTGAA GATATCTCTC GCGAAATCAA CCGCGGTATG
TGGACTATCG GTTACACCGG TCAAAGCCCA GAGCGTATCA AACAGCACAC CCAAAACTGG
GGTACCTTTA GCAACAAGAC GCTTGAAGCT GCAGGTGGTC CATGTAAAGG TGAAACCTAT
GGCTTACCTT GGCCATGTTG GGGCACACCA GAAGCCAAGC ACCCTGGTAC CCAAATTCTG
TATAACCAAG ACAAGCACGT TAAAGACGGC GGCGGTAACT TCCGTGCCCG TTACGGCGTT
GAATACAATG GTAAAAACCT ACTGGCGGAA GGCACCTTCT CTAAGGGCGC TGAAATCCAA
GACGGTTACC CAGAATTCTC TGACAAACTG CTTAAGCAAC TCGGTTGGTG GGATGATCTG
ACTGCAGAAG AAAAAGCGGC TGCAGAAGGT AAAAACTGGA AAACTGATTT GTCAGGCGGC
ATTGTGCGCG TGGCGATCAA GCACGGTTGT ATTCCGTTTG GTAATGCGAA AGCCCGTTGT
ATTGTTTGGA CTTTCCCAGA CCAAGCCCCT GTACACCGCG AGCCAATTTA TACAGCCCGC
CGTGACTTAG TGGCTAAATA CCCAACCTAT GACGATATGC AAGTACATCG TCTACCAACA
CTGTATAAGA CGCTCCAAGA GAACGACTTA AGCGGTAAAT ATCCATTAGT CATGACCTCT
GGTCGTTTAG TGGAATACGA AGGTGGTGGT GAAGAATCTC GTTGTAACCC ATGGCTGGCT
GAGCTTCAAC AGGAAATGTT CATTGAGATC AGCCCTGCTG ACGCTGCTGA CCGAGCTATC
CGCAACGGTG AGTTTGTATG GGTAGAAGGT GCTGAAGGCG GTCGTATCAA GGTACAAGCC
ATGGTGACGC CACGCGTAGC ACCGGGTGTA ACCTTTATGC CATACCACTT TGCGGGTGTG
ATGCACGGAG AAAGTTTAGC GGCTAACTAT CCAGAAGGCA CTGTGCCTTA CGTTATCGGT
GAATCCTGTA ACACGGCACT GACCTATGGT TATGACCCTG TGACCCAAAT GCAGGAAACC
AAAGCGTCGC TCTGTCAGAT CGTTAAAGCA TAA
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| Protein sequence | MKLTRKSDVA QVANKPTLGI SRRQFMKQAG IATGGIAAAS LMGTGMMRRA EAKDVPYDAP
IEIKRTICSA CAVGCGLYAE VQNGVWTGQE PAFDHPFNAG GHCAKGAALR EHGHGEKRLK
YPMKLVDGKW KKISWEDAIN EVGDQMLNIR KESGPDSVYF MGSAKFSNEG CYAYRKLAAM
WGTNNVDHSA RICHSTTVAG VANTWGYGAQ TNSFNDIQNA NAIFLIGANP AEAHPVSMQH
ILIAKEKNNA KIIVVDPRFS RTAAHSDLHC AIRPGTDIPF IYGMLWHIFE NGWEDKTFIQ
HRVFEMETIR AEVKKFPPKE VANITGVSEE VVYQAAKLMA ENRPGTVIWC MGGTQHHVGN
ANTRAYCILQ LALGNMGVSG GGTNIFRGHD NVQAATDLGL LFDNLPGYYG LTTAAWEHWT
NVWELDMEWM KSRFDHGTYL GREPMTTPGM PCSRWFDGVL LEKDKLAQKD NIRMAFFWGQ
SVNTGTRQRD VRDALDKLDT VVVVDPFPTI AGIMHSRKNG VYLLPACTQF EASGAVSNSG
RSIQWREQVI QPLFESKNDI EIMYMLAKKV GISEQWAKRW NIAGNMPVVE DISREINRGM
WTIGYTGQSP ERIKQHTQNW GTFSNKTLEA AGGPCKGETY GLPWPCWGTP EAKHPGTQIL
YNQDKHVKDG GGNFRARYGV EYNGKNLLAE GTFSKGAEIQ DGYPEFSDKL LKQLGWWDDL
TAEEKAAAEG KNWKTDLSGG IVRVAIKHGC IPFGNAKARC IVWTFPDQAP VHREPIYTAR
RDLVAKYPTY DDMQVHRLPT LYKTLQENDL SGKYPLVMTS GRLVEYEGGG EESRCNPWLA
ELQQEMFIEI SPADAADRAI RNGEFVWVEG AEGGRIKVQA MVTPRVAPGV TFMPYHFAGV
MHGESLAANY PEGTVPYVIG ESCNTALTYG YDPVTQMQET KASLCQIVKA
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