Gene SO_4407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4407 
Symbol 
ID1172006 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp4599742 
End bp4600776 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content44% 
IMG OID637346129 
ProductGGDEF family protein 
Protein accessionNP_719930 
Protein GI24375887 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGCAGA GACGCTTGCA ACTTATGCAG TCACTTTTTG ATGAATATAT TGAGATGTAC 
GCTGCCCGGG ATGACAAGCT CACAGCCCGT TTCAGTGATG ATTTTAGTGG TTATGCAGGT 
AGCAGCGATA TCCTTGTCAC CAGTAAAGAT GAATGGATAA AAATAACCCG TCAGGACTTC 
GCCCAAGTCC CCGAACGGAT CCGTATTGAG GTATTAGATC TATCACTACA GGATCTTGCT 
GAAGATATTA TTGTTATTAC TGCATTTTTT CATATTCATC TCCCTGTTCC AGACTCGATA 
CTCAGCCAAG AAACAGCAAG ATTAATGCTG GTTTTCCAGC AAGAAAGCAA AGATTGGAAA 
ATCGTCCATA GTGGAATTTC GATTCCCTAT GGCATAGCCA AAAAAGGTGA AATTTATCCA 
ATGACAAGTT TAGAAGAGCG CAATCGAGAG CTAGAGTCCA TTATACAAGC GCGAACCTAT 
GAACTTGCAG AAGCAAACAA CAGGCTAGAA AAACTCAGTA ATACCGATGG ATTAACCAAT 
ATTGGCAACC GTAGATTGTT TGATCAAATG CTACAAAAGG AATGGAGCCG TGGACAACGC 
AACAACACGC CACTCTCGCT CATCATGCTC GATATTGACC ACTTTAAATT ATTTAATGAC 
CACTATGGTC ACCTCGCGGG AGATGACTGT CTCAAGATGC TGGCGAACGG CTTATCTCAA 
TCAGGTCGTC GGGCGGGTGA ATTGGTCGCA CGCTATGGCG GCGAAGAATT TGTTATTTTA 
CTCCCCAATA CGGATCTACA AACGGCACTC GATACAGCCA AGCACGTACA TCAACTTATC 
CAATCGCTTG CTATTCCCCA TATTAAAACC AACCTAGGCA TTGTCACCGT CAGCGTGGGT 
GTCGCGTGTT TACTCCCCTC AGATAAACAT AACGCCCTAG AATTAGTCCA CCAAGCAGAT 
ACAGCCCTTT ACTTGGCTAA GTCTGCAGGC CGTAACTGCA TACGCTCAGC ACCACCTAAT 
GGAACTCAAA TATAA
 
Protein sequence
MRQRRLQLMQ SLFDEYIEMY AARDDKLTAR FSDDFSGYAG SSDILVTSKD EWIKITRQDF 
AQVPERIRIE VLDLSLQDLA EDIIVITAFF HIHLPVPDSI LSQETARLML VFQQESKDWK 
IVHSGISIPY GIAKKGEIYP MTSLEERNRE LESIIQARTY ELAEANNRLE KLSNTDGLTN 
IGNRRLFDQM LQKEWSRGQR NNTPLSLIML DIDHFKLFND HYGHLAGDDC LKMLANGLSQ 
SGRRAGELVA RYGGEEFVIL LPNTDLQTAL DTAKHVHQLI QSLAIPHIKT NLGIVTVSVG 
VACLLPSDKH NALELVHQAD TALYLAKSAG RNCIRSAPPN GTQI