| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4374 |
|---|
| Symbol | |
|---|
| ID | 1171976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 4567930 |
|---|
| End bp | 4569495 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637346100 |
|---|
| Product | histidine ammonia-lyase, putative |
|---|
| Protein accession | NP_719898 |
|---|
| Protein GI | 24375855 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2986] Histidine ammonia-lyase |
|---|
| TIGRFAM ID | [TIGR01225] histidine ammonia-lyase
[TIGR01226] phenylalanine ammonia-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCACG TAGTTACTCA AACGACAACC GTTGAGTCGC CAATCGAATT TGGCCGTCAG
TTACTCACAT TAGAGCAGGT CGTCGCCGTG GCTAAGGGCG CAAAGGTCAA ACTCTGTGAT
GATGCCGATT ATCAAGAATA TATCCAAAAG GGCGCCCGCT TTATCGATAG TTTGCTGCAC
GAAGAAGGCG TGGTCTACGG CGTCACCACA GGCTATGGCG ACTCTTGCAC AGTGAATGTG
AGTCTTGACT TGGTCCACGA GTTGCCGCTG CACTTATCCC GTTTTCATGG TTGTGGCCTT
GGTGAAGTCT TAAGCGTAAT GCAAGCGCGC GCCGTGATGG CTTGCCGTTT AAACTCCCTC
GCCATTGGCA AATCCGGCGT GACATATGAG CTATTAAAGC GCATCCAAAC CTTGCTTAAT
CTCAATATCG TGCCAGTGAT CCCCGAAGAA GGCTCAGTCG GTGCCAGCGG AGACTTAACG
CCACTGTCTT ACCTTGCCGC CGTGCTGGTT GGTGAGCGTG AGGTGATTTA CCAAGGCGAG
CGCCGAGCCA CCAAAGAGGT TTATCACGAG CTGAATATCA CGCCCCATGT GCTACGTCCC
AAGGAAGGTT TAGCCCTGAT GAACGGCACG GCAGTGATGA CAGCGTTAGC CTGTTTAGCC
TTTGATCGCG CACAATATTT AGCGCGTTTA GCCAGCCGCA TTACCGCCAT GGCGTCGTTA
ACCCTTAAAG GCAACTCCAA CCATTTCGAC GATATTCTGT TTGCCGCCAA ACCTCATCCA
GGGCAAAACC AAATCGCCAC TTGGATACGG GAAGACTTGA ACCACCATGT TCACCCGCGC
AATTCCGACA GATTGCAGGA CAGATATTCC ATCCGCTGTG CGCCGCATAT TATTGGCGTG
CTGCAGGATG CGCTGCCCTT TATGCGCCAA TTTATCGAAA CCGAAGTTAA CAGCGCCAAC
GACAACCCGA TTGTCGATGC TGAAGGCGAG CATATTCTCC ATGGCGGCCA TTTTTACGGC
GGGCATATCG CCTTTGCGAT GGACTCCTTA AAAAATATTG TGGCCAATAT CGCCGATCTG
ATTGATCGCC AAATGGCATT AGTGATGGAC CCTAAATTTA ACAACGGCTT ACCCGCTAAC
CTTTCGGGTT CAACCGGGCC ACGCCGCGCC ATCAACCATG GCTTTAAGGC GGTGCAAATC
GGCGTTTCAG CCTGGACGGC AGAAGCACTG AAACACACTA TGCCCGCAAG CGTTTTCTCA
CGCTCAACCG AATGCCACAA CCAAGATAAA GTCAGCATGG GCACCATTGC CGCCCGCGAC
TGTATGCGTG TATTGCAACT AACGGAACAA GTCGCCGCCG CGGCGCTACT TGCTATGACT
CAAGGCATTG ATCTGCGTAT CACACAAAAC GAGTTAGACG AAGCCTCACT GACGCCATCA
CTGGCGACCA CGCTCGCCCA AGTGCGCGCT GACTTTGAGC CATTAGTCGA AGACAGACCG
CTCGAAGCCG TGCTACGCCA AACCGTCGCT AAAATCCAAG CCGGTGAATG GGAAGTGTGC
CGATGA
|
|---|
| Protein sequence | MSHVVTQTTT VESPIEFGRQ LLTLEQVVAV AKGAKVKLCD DADYQEYIQK GARFIDSLLH
EEGVVYGVTT GYGDSCTVNV SLDLVHELPL HLSRFHGCGL GEVLSVMQAR AVMACRLNSL
AIGKSGVTYE LLKRIQTLLN LNIVPVIPEE GSVGASGDLT PLSYLAAVLV GEREVIYQGE
RRATKEVYHE LNITPHVLRP KEGLALMNGT AVMTALACLA FDRAQYLARL ASRITAMASL
TLKGNSNHFD DILFAAKPHP GQNQIATWIR EDLNHHVHPR NSDRLQDRYS IRCAPHIIGV
LQDALPFMRQ FIETEVNSAN DNPIVDAEGE HILHGGHFYG GHIAFAMDSL KNIVANIADL
IDRQMALVMD PKFNNGLPAN LSGSTGPRRA INHGFKAVQI GVSAWTAEAL KHTMPASVFS
RSTECHNQDK VSMGTIAARD CMRVLQLTEQ VAAAALLAMT QGIDLRITQN ELDEASLTPS
LATTLAQVRA DFEPLVEDRP LEAVLRQTVA KIQAGEWEVC R
|
|---|
| |