| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4358 |
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| Symbol | dmaA-2 |
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| ID | 1171961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4551016 |
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| End bp | 4553604 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637346085 |
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| Product | anaerobic dimethyl sulfoxide reductase, A subunit |
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| Protein accession | NP_719882 |
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| Protein GI | 24375839 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAC GTGCATTTTT GAAAATGTCG GCCTCATGTG CGGCTGCTGC TACCGTTGTG
GGTTGTGGTT CTGATAAAAA TCCAGTATTA AAGCCAGAGG TATCGCCTGA GCAGGTGCCT
GAAATATCCA AGCTTTCAGC ATGTATTGGT AATTGTTTTC AGACTTGTCC ATTAAGAGTT
TATAGTCGCA ATGGCATTAT TACACGAATT GAATCTGAAA GCGGTGGTGA TATCAAATTT
GTGGATAACT GGAGTGTCGA TGGTGCTCAT CATGAAATTC GCCCTTGTTT AAAAGGTCGT
GCACAAAAAC AAAAGGCTTA TAGTGCCGAT CGTGTAAAAT ATCCCATGAA GCGTGTTGGA
CCAAGAGGCA GTGGCCAATA TGTCCGCATT AGTTGGGATG AAGCTATTAA TACCGTTGCC
CAAGAGTTAT CCACTAAGAT TACTACTTAT GGTGCACAAT CCATTTATTT ACCCGTAGCA
ACCGGAGATT ATGATTATCA AGTCGATGGC ATGTATGCGG CAATGATGTT CTTGCATGAA
ATAACCAAGA AGAAAATTCC ACTTTATATT CCAGAGATGG ATTTTACGAT GGAGTTAGAT
GCATCTGGCT ATCTCATGTA TCACGATAGT TATTCGGCCG CGCAGATGAA AGATGCGGTA
AAGAGCACCT TTGGTTGGGA CGATCTGTGG GGAACGGGGA ATACCTTACT CGATGTCAAA
AATGGCACCG ATTTGATGAT TTGTTTTGGT TATAACCCGA TGGAAAGTCG GATGGGCGGC
GCGGGTTCTG CTTACGATTA CACTAATCTG AAGCGTCAAT TTGGATTTAA GACTATTTAT
ATCGAACCAC GTTATACCGA TACTATGGTG GTTTGTGATG ATCAGTGGGT CCCTATTCGC
CCAGGTACCG ATGCAGCGCT TGCTGAAGCA ATTGCCTATG TATGGATTGC TGAGATGGAT
GAAGCGCCGC TGGATATGGC ATTTTTGCAG AGTAAAGTTT ATGGCTATGG CGCAGAAGCG
GCTTTCGATC ATTATCCTGA GTTGCCATTA GCAAAAAGTT ATAAGGGGCA TATTTTAGGG
CTAGATGATG GCCAAGCTAA GACACCCGAA TGGGCAGCAG CAATTACGGG GATTCCTGTC
GATACCATTC GCGCACTGGC CAGTGAAATT GCGGCGGCAA AAACACCGTT CTTTATTCAA
GGTTGGGGTA TTCAGCGTGC CCAAAATGGT GAAAATGCCG CCCGTTCATT ATTTATGTTG
CCAATTTTGC TGGGCAAGGT TGGTGATAAA GGCACCAATT TCTGCTCTGT ACCTGGCGCC
AAAACTTACG CCAAACCGAT TGTTGCAGGG ATGGAAGCCG ACAGTGTCGG TAATAGTGTG
GGGTCAGCTG TCATTAATGG TACAGAATTT ACCATTCCTG GCTATAAATG GTTAGAAGGG
GTTCAGCGTC CACTTAATTC TCGGGATGAT GGTCTGCGAC ATATGCTCGG GGAAGAGCAA
AAAAAGGATC ACGATAATAT TCTCGAGTTG AAAAATCCGA TTAAGTTTAT TTTTGGTAAT
GCCTGTGGCA CGACATTAAA TCAAACTGCA GATATTAATC ATACTTTAGA TATTCTTAAT
AATGCGCCTG AAGCTCAGGA TCTGTTTATT TTGGCGATAG ATCATATGTT TTCTCCGAGT
GCAAAAATGG CGGATATCAT TTTACCTTGT ATTACTAACT TAGAAAATTC TGATATTGTG
ACGAATAAGT TAGATCATGA TTCGGGAATG ATGGTGTATT CCTATGTGTT TGAACGTGCT
ATTGAACCTA TGTATGAAGC CAAAAGTACT TGGGAGATTT GTCGATTATT AGCGGCACGA
ATGGGTGTTG AGCACTCTTA TGCTCGCTTA AAAACGCAAG ATGAATGGGT TAAATGGAGT
TTTGAGCATT ACGCTAAAAA AGTGCCTAAT TTATATAATC CAGAAGATAC CTATGAGTCG
GTATTAGGCC GCAGTCCTGT GCGCCGTATT GCCTCTGAAA ATCCATTATT TAAAGGATTG
CGTGAATTTA AATATGGTGG CGTAACCTTG AATACTCCTT CTAAAAAAAT TGAGGCTTAT
TCTTTAACAT TATTAAATCG CACTCGATTT GAAAAGTTTG AAGAAACAGA GACCAGCTTT
ATTGGGAAAT ATATTCCGGC AACTGAAGGC GCTGAGGATA ATGAGTTTGC TGCAGAATAT
CCGTTCCAGT TGATAAGTTG GCATCATAAG GGGCGGGTGC ATTCAACTCA TGCTAATTAT
CCTTGGTTAA AAGAAGCCAA TGATCAAGTG GCGTGGATTA ATCCACTTGA TGCGCAGCGC
TATGGTGTCG TTAACGGCAA AAAAATGACC TTGACCAACC CTCGCGATGC AAAAATGGTG
ATCACCGCCA AAGTCACTAC GCGAGTCATG CCCGGCGTGA TTGCCATGGG GCATGGGGCA
TGGCATCAAC CGGATGCGAA TGGGGTCGAT CATGGCGGTA GTGTCAACGT GCTAGTTAGT
CGCAAAGCTA GCCCGACAGC GCGTGGGATC CCCGCCAATA CTGCGCGTAT CAGAATTGTT
CAGGCTTAA
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| Protein sequence | MKRRAFLKMS ASCAAAATVV GCGSDKNPVL KPEVSPEQVP EISKLSACIG NCFQTCPLRV
YSRNGIITRI ESESGGDIKF VDNWSVDGAH HEIRPCLKGR AQKQKAYSAD RVKYPMKRVG
PRGSGQYVRI SWDEAINTVA QELSTKITTY GAQSIYLPVA TGDYDYQVDG MYAAMMFLHE
ITKKKIPLYI PEMDFTMELD ASGYLMYHDS YSAAQMKDAV KSTFGWDDLW GTGNTLLDVK
NGTDLMICFG YNPMESRMGG AGSAYDYTNL KRQFGFKTIY IEPRYTDTMV VCDDQWVPIR
PGTDAALAEA IAYVWIAEMD EAPLDMAFLQ SKVYGYGAEA AFDHYPELPL AKSYKGHILG
LDDGQAKTPE WAAAITGIPV DTIRALASEI AAAKTPFFIQ GWGIQRAQNG ENAARSLFML
PILLGKVGDK GTNFCSVPGA KTYAKPIVAG MEADSVGNSV GSAVINGTEF TIPGYKWLEG
VQRPLNSRDD GLRHMLGEEQ KKDHDNILEL KNPIKFIFGN ACGTTLNQTA DINHTLDILN
NAPEAQDLFI LAIDHMFSPS AKMADIILPC ITNLENSDIV TNKLDHDSGM MVYSYVFERA
IEPMYEAKST WEICRLLAAR MGVEHSYARL KTQDEWVKWS FEHYAKKVPN LYNPEDTYES
VLGRSPVRRI ASENPLFKGL REFKYGGVTL NTPSKKIEAY SLTLLNRTRF EKFEETETSF
IGKYIPATEG AEDNEFAAEY PFQLISWHHK GRVHSTHANY PWLKEANDQV AWINPLDAQR
YGVVNGKKMT LTNPRDAKMV ITAKVTTRVM PGVIAMGHGA WHQPDANGVD HGGSVNVLVS
RKASPTARGI PANTARIRIV QA
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