| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4327 |
|---|
| Symbol | |
|---|
| ID | 1171932 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 4518424 |
|---|
| End bp | 4519542 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637346057 |
|---|
| Product | HlyD family secretion protein |
|---|
| Protein accession | NP_719852 |
|---|
| Protein GI | 24375809 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTTA CAGATATCTT TATTAGGCGA CCTGTACTCG CCGCCTCAAT CAGCTTTCTC
TTGCTGCTGT TAGGCTTTAA CGCCCTCAAT AGCATGCAAG TGCGTGAATA TCCGAAGATG
ACTAATACCG TAGTCACGGT ATCGACCAGT TATTACGGTG CGGATGCAAA TCTAATCCAA
GGTTTTATTA CACAACCGTT AGAGCAAGCG TTAGCGCAGG CCGATAACGT TGACTTTATG
ACGTCAGAGA GCTTCCTCGG CACCTCGAAA ATTTCGGTAT ATATGAAGCT CAATACCGAT
CCCAATGGTG CCTTGGCCGA TATTCTCGCC AAAGTAAACT CGGTGAGATC GCAACTGCCC
AAAGAGGCTG AAGATCCCAG TGTTGAAATG TCCACTGGCT CGCAAACCTC TGTGCTTTAT
ATTTCATTTT TTAGTGACCA AATTAACTCA AGCCAGCTAA CGGATTACCT TGAACGCGTC
GTCAAACCTC AGCTCTTTAC CATTGACGGC GTTGCTAAAG TGAATTTATA CGGCGGTATC
AAATACGCCA TGCGTATTTG GCTCGATCCG GCCAGAATGG GCGCGTTTAA CCTCTCAGCC
AGCGATGTGA TGCAAGTATT GCAGGCGAAC AACTATCAGT CAGCTGTGGG TCAAACCAAC
AGTGTTTACA CCCTTTTCAA CGGTACCGCA GACACCCAAG TTGCCACCAT CGAAGAGTTA
AAACGCTTAG TGATCGGCAG TAAGGACGGT TTAGTCGTCC GTCTCGGTGA TATTGCCGAT
GTTAGCCTCG AAAAGAGCCA TGATATCTAT CGCGCCTTAG CCAATGGTAA AGAGGCGGTG
GTCATTGGCC TCGATGTCAC GCCAACGGCT AACCCGCTTA CCGTCGCGGC AGATACCCGC
GCCCTACTAC CCGAAATCGA GCGTAACTTA CCGCCATCCA TTGAATCGAG CATTCTGTAC
GACTCCTCAC TCGCAATTGA TGAATCGATT AAAGAAGTGG TTAAAACCAT TGGTGAAGCC
GCGATTATTG TTATCGTGGT AATCACTCTC TTCTTAGGTT CGCTTCGCGC CGTGGTGATC
CCGATTGTGA CCATTCCGCT CTCGCTGATT GGGGTTGCCA TCATCATGCA GATGTTTGGT
TTTACTCTCA ATCTGATGAC CCTGCTCGCC ATGGTGCTCG CCATTGGTCT CGTGGTTGAC
GATGCGATTG TGGTGGTCGA AAACGTCGAC AGGCATATTA AGCTGGGTGA GTCGCCCTTT
AGAGCGGCGA TTATCGGTAC TCGCGAAATC GCGGTGCCCG TTATTTCGAT GACCATTACC
CTCGCCGCGG TGTATGCACC GATTGCCTTA ATGGGCGGGA TCACAGGCTC ATTATTTAAA
GAGTTCGCCC TTACACTCGC AGGTTCTGTG TTTATCTCGG GCATAGTGGC ACTCACACTG
TCACCCATGA TGTGTGCCAA AATCCTCAAA CCCCATACCA CGCCAAATCG CTTCGAAATG
GGGGTAGAAA ACTTCCTCAC CGGTCTAACT CGCCGTTACA GCAACATGCT AGATGCGGTG
ATGTTACATC GTCCTGTGAT CGTCGCCTTT GCGATTATCG TGTTCGCTTC ACTGCCGGTA
CTGTTTAAGT TTATCCCGTC AGAACTTGCA CCGAACGAAG ATAAAGGCGT AGTGATGATG
ATGGGCACGG CACCTTCGAC CGCTAACTTG GACTACATCC AAGCCAATAT GGGCTTAGTC
ACGGATATGA TTAAGGCACA GCCTGAATCA GCCGCGTCAC TCGCCTTCGT GGGCGTACCA
AGTTCCAGCC AAGCCTTCGG GATCGCGCCA TTAGTGCCCT GGAGTGAGCG GGATAAGAGC
CCAAAAACAA ATGCAGGAGT TTTTTGCTAA
|
|---|
| Protein sequence | MKKWTLSMLA IAVLAFGSVI GFNLMVKSKI ADAIANMPEA EFPVTAMALE MQKWQPTIDA
IGFVEPHQGV TISNELAGRV TSINFENGSR VEKGQLLAEL DAKVERANLK SKMVQLPAAE
ADFKRLSKLY AQKSVSKQDL DNSESKYLAL QADIESLKAT IERREISAPF SGLVGIRNIN
LGEYLQPGTD IVRLEDISTM KIRFTIPQTQ LPRIAVGQKI HVFVDSYPEQ PFEGEIAAIE
PAVFYQSGLI QVQARIPNDN AKLRSGMFAR VSILLPELND QFVLPQTAIN FTLYGNSIYL
IKDVEENGKK LARVEQINLT VLERNGNNAL VSGALKAGDR IVTSGQIRLS NNSKVTVVED
QALIHSDTMP KL
|
|---|
| |