Gene SO_4325 details

Gene Information

• Locus tag: SO_4325
• Symbol: rep
• ID: 1171930
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 4515491
• End bp: 4517506
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637346055
• Product: ATP-dependent DNA helicase Rep
• Protein accession: NP_719850
• Protein GI: 24375807
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0210] Superfamily I DNA and RNA helicases
• TIGRFAM ID: [TIGR01074] ATP-dependent DNA helicase Rep

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTCA ATCCTGCCCA AAATGATGCC GTTCATTATG TTTCGGGGCC TTGCTTAGTA 
TTAGCGGGCG CGGGCAGTGG CAAAACGCGT GTGATTATCA ACAAGATTGC TTACCTAGTG 
CAAAAGTGCG GCTACAATGC CCGTAATATC GCCGCGGTGA CGTTTACCAA TAAAGCTGCC 
CGTGAGATGA AGGAGCGGGT CGCGCAGTCA ATGGGGCGAA AAGAAGCGCG AGGCTTGTGG 
ATTTCGACCT TCCATACTTT AGGGCTTGAG ATTGTAAAGC GTGAGCATAA AGTGCTGGGA 
TTAAAGCCTG GCTTCTCACT GTTTGATGAT CAGGACACGC TTGCACTCCT TAAAGAGCTG 
ACCCAAAAAG AATTACAAGA AGATAAGGAT TTACTGAAAG CCTTGGCGGG GGCCATTTCC 
AATTGGAAGG GCGGGTTGAT TATTCCCGAC CAGGCACGAA AGCTGGCTAA AGATGAACAG 
CAGCAATTGT TCGCTCTGTT ATATCAACGC TATGCCCAGC ATATGAAAGC TTATAATGCC 
TTGGATTTTG ATGACTTAAT TCTGTTACCG ACGCTATTGC TGCGCCACCA TGAAGAAGTG 
CGTACTCGCT GGCAAACCAA GATCCAATAC CTGCTGGTGG ACGAGTATCA GGATACCAAC 
ACCTCCCAAT ATGAAATGGT CAAGCTACTG GTGGGCGAGC GCGCGCGATT TACCGTAGTG 
GGTGACGATG ACCAGTCTAT CTATTCTTGG CGCGGTGCTA AGCCACAAAA CTTAGTGTTG 
CTGGGCAAAG ACTTCCCTAA GCTTAAGCTG ATTAAATTGG AGCAAAATTA TCGCTCCAGT 
CAGCGTATTT TGCGGGCGGC AAACATCCTT ATCGCCAACA ATCCCCATGT GTATGATAAG 
TCGTTATTTA GCGAACTGGC TTATGGTGAG CCGATGCGGG TGCTGTTTGC CGCCAATGAG 
GAGCAAGAAG CAGAGCGCGT GGTCGCCGAG ATTGTTCGCC ACAAGTTTGT CGGCCGTACG 
CAATTTGGTG ACTACGCGAT TTTGTATCGC GGTAACCATC AGTCTCGCCT ACTTGAGCGG 
GCGTTGATGA CAAACCGCAT CCCCTACAAA TTGAGCGGTG GCACCTCGTT TTTTTCCCGT 
GCCGAAATTA AAGACATCAT GGGTTACCTC AAACTGGTGG TAAATCCCGA TGATGATAAT 
GCCTTTTTGC GGGTAGTTAA CTTACCTAAA CGTGGGATTG GCCCATCGAC CTTGGAGCGT 
TTGGGTAACT TTGCCAACGA GAAGCATATT TCCATGTTCG AGGCGATTTT TGCCCCTGAA 
TTGAATCATC ATCTGCCACC TAATGCCATG TCGGCACTCT ATCAATTTGG CCGTTTTATT 
GTTGATACAG GGGAGCATGC CGACCGAGGT GAGCCTGTTG AAGCGGTAAA ACAACTGATC 
CGTAAGATTA ATTACGAAGA CTACTTATAC GAGACCAGTA CCAGTGCCAA AGCCGCCGAA 
ATGCGGATGA AGAATATCTC GGAGCTGTAT CGCTGGGTAA CTGAAATGCT CTCAGGGGAT 
GAGTTAGAAG AACCTATGAC TTTGCCCGAA GTGGTTAACC GTCTCACGCT GCGAGATATG 
ATGGAACGCA ATAGTGAGGA TGAAGGCGGC GATCAGGTGC AGCTTATGAC CCTACATGCC 
TCTAAAGGGC TAGAGTTTCC ATTTGTATTT ATGGTGGGAG TTGAAGAGCG TATTTTGCCG 
CACCAGACCA GCATAGATGA AGATAACGTC GATGAAGAAC GTCGTCTTGC CTATGTGGGG 
ATAACGCGAG CGCAGCGTGA GTTGTGGTTT ACGCTTTGCC GTGAGCGTCG TCAGTTTGGT 
GAAACAATGC GTTGTGAGCC CAGCCGCTTC CTCCACGAGT TACCCCAGGA CGATTTAGTA 
TGGGAAAACC GTAAGCCCCA ACAAACCGAG CAAGAGCGTA TGCAAACAGG CCGGAGCCAT 
ATTTCGAATT TAAGGGATAT GTTTAAAAAG TCGTAA 

 

Protein sequence

MKLNPAQNDA VHYVSGPCLV LAGAGSGKTR VIINKIAYLV QKCGYNARNI AAVTFTNKAA 
REMKERVAQS MGRKEARGLW ISTFHTLGLE IVKREHKVLG LKPGFSLFDD QDTLALLKEL 
TQKELQEDKD LLKALAGAIS NWKGGLIIPD QARKLAKDEQ QQLFALLYQR YAQHMKAYNA 
LDFDDLILLP TLLLRHHEEV RTRWQTKIQY LLVDEYQDTN TSQYEMVKLL VGERARFTVV 
GDDDQSIYSW RGAKPQNLVL LGKDFPKLKL IKLEQNYRSS QRILRAANIL IANNPHVYDK 
SLFSELAYGE PMRVLFAANE EQEAERVVAE IVRHKFVGRT QFGDYAILYR GNHQSRLLER 
ALMTNRIPYK LSGGTSFFSR AEIKDIMGYL KLVVNPDDDN AFLRVVNLPK RGIGPSTLER 
LGNFANEKHI SMFEAIFAPE LNHHLPPNAM SALYQFGRFI VDTGEHADRG EPVEAVKQLI 
RKINYEDYLY ETSTSAKAAE MRMKNISELY RWVTEMLSGD ELEEPMTLPE VVNRLTLRDM 
MERNSEDEGG DQVQLMTLHA SKGLEFPFVF MVGVEERILP HQTSIDEDNV DEERRLAYVG 
ITRAQRELWF TLCRERRQFG ETMRCEPSRF LHELPQDDLV WENRKPQQTE QERMQTGRSH 
ISNLRDMFKK S