| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4309 |
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| Symbol | lysA |
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| ID | 1171914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4486089 |
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| End bp | 4487333 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637346035 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | NP_719834 |
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| Protein GI | 24375791 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGATCACT TTCTCTACCA AGATAATACC CTGTACGCCG AAGGCTGTCG GGTCAATGAT
TTAGCCCAAA CCTATGGTAC GCCACTGTAC ATCTATTCCC GTGCGACCCT CGAGCGCCAT
TGGCATGCCT TTAATAATGC GGTGGCAGGC CATCCCCATT TAGTGTGTTA CGCGGTAAAA
GCCAATTCGA ACTTAGCGGT GCTTAACGTA TTGGCTCGCT TAGGCAGTGG CTTTGATATT
GTCTCCGGTG GCGAGTTAGC GCGGGTGATA GAGGCCGGTG GCGATCCGGC CAAAGTGGTG
TTTTCGGGCG TGGGTAAAAC CGTTGCCGAA ATGGAGCAGG CATTAAATCT TGGTATCTAC
TGCTTTAATG TGGAGTCGAG TGCCGAGCTT GAACAGTTAA ACTTGGTCGC TGGTCGTTTA
GGTAAAGTGG CGCCCGTGTC GCTGCGCGTT AATCCCGATG TGGATGCGGG CACTCATCCT
TATATTTCTA CTGGCCTTAA AGAAAACAAA TTCGGCATTG CCATGGACGA AGCAGAAGCG
GTATTTGCTC GCGCCCATGC CCTGCCACAT TTGCAGGTGA AAGGCGTTGA TTGTCATATC
GGCTCACAGC TCACTGAAAT CCAGCCGTTT CTCGATGCAA TGGATAGAAT GCTGTCGCTC
ATCGACCGCC TAGCCGAGCA GGGGATTGTG ATTGAGCACT TTGATGTCGG TGGTGGTTTG
GGGGTGACCT ATGATGATGA AACCCCGCCG CACCCTGATG TGTACGCCGC TGCACTGCTC
AAGCGTTTAG GTCATCGCAA GCTCAAACTG ATTTTTGAAC CGGGCCGTGC GATTGCCGCC
AATGCGGGGA TTTTTGTGAC TGAGGTGCTG TACCTGAAAG AAAACAGCGA CAAACGCTTT
GCGATTGTCG ATGGCGCCAT GAACGATTTA ATTCGCCCCG CACTCTATAG CGCATGGCAA
AAGATTATTC CGGTTACTCC AAGGGATGAT CAGGCCCATG TATTTGATAT CGTTGGCCCT
GTTTGCGAAA CCGGTGACTT TTTAGGTAAG GACCGCGAGT TTGCCATCGC CCCAGGCGAT
TTACTGGTCG TGCGCTCCAG TGGTGCTTAC GGTTTTGCAA TGGCGTCGAA CTACAATACT
CGTCCGCGTG CGGCCGAGGT CATGGTGGAT GGCGATAAGG CTTATCTGGT GCGAGAGCGA
GAAAAATTAC CGCAGCTCTG GCAAGGTGAG CAACTCCTGC CGTAA
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| Protein sequence | MDHFLYQDNT LYAEGCRVND LAQTYGTPLY IYSRATLERH WHAFNNAVAG HPHLVCYAVK
ANSNLAVLNV LARLGSGFDI VSGGELARVI EAGGDPAKVV FSGVGKTVAE MEQALNLGIY
CFNVESSAEL EQLNLVAGRL GKVAPVSLRV NPDVDAGTHP YISTGLKENK FGIAMDEAEA
VFARAHALPH LQVKGVDCHI GSQLTEIQPF LDAMDRMLSL IDRLAEQGIV IEHFDVGGGL
GVTYDDETPP HPDVYAAALL KRLGHRKLKL IFEPGRAIAA NAGIFVTEVL YLKENSDKRF
AIVDGAMNDL IRPALYSAWQ KIIPVTPRDD QAHVFDIVGP VCETGDFLGK DREFAIAPGD
LLVVRSSGAY GFAMASNYNT RPRAAEVMVD GDKAYLVRER EKLPQLWQGE QLLP
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