| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4308 |
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| Symbol | dapF |
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| ID | 1171913 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4485191 |
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| End bp | 4486018 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637346034 |
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| Product | diaminopimelate epimerase |
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| Protein accession | NP_719833 |
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| Protein GI | 24375790 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATCCAAT TCACTAAGAT GCACGGACTT GGCAACGATT TTATGGTGGT CGATGGTATC
ACGCAGAACG TGTTCTTTTC GCCTGAGCAG ATCCGCCGTT TAGCTGACCG TAACTTCGGC
GTGGGTTTCG ACCAACTCTT GCTGGTTGAG CCGCCCTATG ATCCTGACCT CGACTTTCAC
TATCGGATCT TTAATGCCGA CGGTGGCGAA GTTGAAAACT GTGGTAATGG CGCCCGTTGC
TTTGCGCGCT TTGTCCGTAA TAAAGGTCTA ACGAATAAGA ATAAAATTCG TGTTAGCACC
TCCGCAGGTA AGATGACACT GCGCCTTGAG CGCGATGGCA CTGTAACGGT CAATATGGGC
GTGCCCGTGC TCGAACCTAG CCAAATCCCC TTTAAAGCCA AAAAAGCCGA AAAAACCTAC
CTACTGCAAA CGCCGCAACA AACCTTTTTG TGTGGTGCGG CCTCCATGGG TAATCCCCAT
TGCGTGCTCG ATGTGGAAGA TGTTGCCAAT GCTAATGTCG CCGAAATCGG TGCACTTCTC
ACCAAACATG AGCGATTTCC GCGTGGGGTG AACGTCGGTT TTATGCAGGT GGTCAATGCT
GGGCATATCA AACTGAGAGT CTATGAGCGC GGGGCGGCCG AAACCTTAGC CTGCGGTACA
GGTGCTTGCG CCGCCGTTGT CGTGGGGCAA ATTCAAGGCA AACTTGACCA ACAAGTACAA
GTGGATTTAC CGGGCGGCAG CTTAACCATC AATTGGGAAG GTGAGGGCAA ACCACTGTGG
ATGACGGGCC CTGCACAGCA TGTTTATGAT GGACAAATTC AGTTATGA
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| Protein sequence | MIQFTKMHGL GNDFMVVDGI TQNVFFSPEQ IRRLADRNFG VGFDQLLLVE PPYDPDLDFH
YRIFNADGGE VENCGNGARC FARFVRNKGL TNKNKIRVST SAGKMTLRLE RDGTVTVNMG
VPVLEPSQIP FKAKKAEKTY LLQTPQQTFL CGAASMGNPH CVLDVEDVAN ANVAEIGALL
TKHERFPRGV NVGFMQVVNA GHIKLRVYER GAAETLACGT GACAAVVVGQ IQGKLDQQVQ
VDLPGGSLTI NWEGEGKPLW MTGPAQHVYD GQIQL
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